Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28433 | 3' | -55.9 | NC_005946.1 | + | 66928 | 0.66 | 0.833781 |
Target: 5'- gGCCUgguucaAGAUCGUGGUCAUCaccaagaggGUGUCUg -3' miRNA: 3'- -UGGGg-----UCUGGUACCAGUAG---------CACAGGu -5' |
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28433 | 3' | -55.9 | NC_005946.1 | + | 82898 | 0.67 | 0.807386 |
Target: 5'- gGCCCCGGAgCCAgucgccacgGGaCAcUCGcUGUCCAg -3' miRNA: 3'- -UGGGGUCU-GGUa--------CCaGU-AGC-ACAGGU- -5' |
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28433 | 3' | -55.9 | NC_005946.1 | + | 8346 | 0.67 | 0.758214 |
Target: 5'- gGCCaCCAGACCuucgacggcggGGUUAUCGggcUCCAg -3' miRNA: 3'- -UGG-GGUCUGGua---------CCAGUAGCac-AGGU- -5' |
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28433 | 3' | -55.9 | NC_005946.1 | + | 59447 | 0.68 | 0.740382 |
Target: 5'- gUCCCuGGCC-UGGUCGUUGUugacgcuggcGUCCAu -3' miRNA: 3'- uGGGGuCUGGuACCAGUAGCA----------CAGGU- -5' |
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28433 | 3' | -55.9 | NC_005946.1 | + | 2411 | 0.69 | 0.699685 |
Target: 5'- gACaCCCAGGCCcagGUGGacCAguUUGUGUCCAu -3' miRNA: 3'- -UG-GGGUCUGG---UACCa-GU--AGCACAGGU- -5' |
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28433 | 3' | -55.9 | NC_005946.1 | + | 86446 | 0.7 | 0.595056 |
Target: 5'- cGCCCCAGACCA-GGcCucUGUGUCUu -3' miRNA: 3'- -UGGGGUCUGGUaCCaGuaGCACAGGu -5' |
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28433 | 3' | -55.9 | NC_005946.1 | + | 84979 | 1.08 | 0.002116 |
Target: 5'- aACCCCAGACCAUGGUCAUCGUGUCCAa -3' miRNA: 3'- -UGGGGUCUGGUACCAGUAGCACAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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