miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28434 3' -57.4 NC_005946.1 + 88155 0.66 0.808312
Target:  5'- aCC-GUGGCucaggCCCUGuccaGGGugGUgggGACCa -3'
miRNA:   3'- aGGaCAUCG-----GGGAC----CCCugCAa--CUGG- -5'
28434 3' -57.4 NC_005946.1 + 26973 0.66 0.79021
Target:  5'- gCCUGUGGgCCUUGGuGGCGUcagUGuuCCa -3'
miRNA:   3'- aGGACAUCgGGGACCcCUGCA---ACu-GG- -5'
28434 3' -57.4 NC_005946.1 + 49586 0.66 0.787443
Target:  5'- aUCCcGUccagGGCCCCgGGGGAcaccacaaacccccCGUUuGCCg -3'
miRNA:   3'- -AGGaCA----UCGGGGaCCCCU--------------GCAAcUGG- -5'
28434 3' -57.4 NC_005946.1 + 19821 0.66 0.780937
Target:  5'- cCCUGUGGCCCCaGGacaGGCucaGGCCc -3'
miRNA:   3'- aGGACAUCGGGGaCCc--CUGcaaCUGG- -5'
28434 3' -57.4 NC_005946.1 + 59684 0.66 0.775307
Target:  5'- gUCCggGUcggacgagaAGCCcucuaucuugacgggCCUGGGGACGUagcccagGGCCa -3'
miRNA:   3'- -AGGa-CA---------UCGG---------------GGACCCCUGCAa------CUGG- -5'
28434 3' -57.4 NC_005946.1 + 97856 0.66 0.771527
Target:  5'- gCCUGUGGCCg--GGGcGGgGUUGAUg -3'
miRNA:   3'- aGGACAUCGGggaCCC-CUgCAACUGg -5'
28434 3' -57.4 NC_005946.1 + 27869 0.66 0.771527
Target:  5'- gCCUGg---CCUUGGGGAUGg-GACCa -3'
miRNA:   3'- aGGACaucgGGGACCCCUGCaaCUGG- -5'
28434 3' -57.4 NC_005946.1 + 49227 0.67 0.752338
Target:  5'- -gCUGUcagaccuGCCCCUGGGGAaaccagUGuCCg -3'
miRNA:   3'- agGACAu------CGGGGACCCCUgca---ACuGG- -5'
28434 3' -57.4 NC_005946.1 + 47902 0.67 0.742576
Target:  5'- uUCCUGUcccuGGCCCUcacccucaGGGaGAUGUaGGCCu -3'
miRNA:   3'- -AGGACA----UCGGGGa-------CCC-CUGCAaCUGG- -5'
28434 3' -57.4 NC_005946.1 + 79357 0.67 0.726758
Target:  5'- cUCCUGUucauGCCCaUGGGGAUggucgaggggucagaGUcGGCCc -3'
miRNA:   3'- -AGGACAu---CGGGgACCCCUG---------------CAaCUGG- -5'
28434 3' -57.4 NC_005946.1 + 23927 0.67 0.702642
Target:  5'- ---gGUAGCCCUcguUGGGGAUGUaaaaGACUu -3'
miRNA:   3'- aggaCAUCGGGG---ACCCCUGCAa---CUGG- -5'
28434 3' -57.4 NC_005946.1 + 76575 0.68 0.692484
Target:  5'- gUCCgGUcgGGCCCgUGGGaGCGgcugGGCCu -3'
miRNA:   3'- -AGGaCA--UCGGGgACCCcUGCaa--CUGG- -5'
28434 3' -57.4 NC_005946.1 + 24870 0.68 0.682274
Target:  5'- aUCC-GUcGUCCCUGGGGAUGauaGGCa -3'
miRNA:   3'- -AGGaCAuCGGGGACCCCUGCaa-CUGg -5'
28434 3' -57.4 NC_005946.1 + 64807 0.68 0.651428
Target:  5'- cCUUGUcGCCCCUGGGucccacgcgcccGACug-GACCg -3'
miRNA:   3'- aGGACAuCGGGGACCC------------CUGcaaCUGG- -5'
28434 3' -57.4 NC_005946.1 + 41854 0.69 0.63077
Target:  5'- cCCUGcGGCCCCUGgucgcccauGGGACcccugGUgccGACCg -3'
miRNA:   3'- aGGACaUCGGGGAC---------CCCUG-----CAa--CUGG- -5'
28434 3' -57.4 NC_005946.1 + 49434 0.69 0.599812
Target:  5'- cUCCag-GGCCCUggaGGGGACGggGuCCu -3'
miRNA:   3'- -AGGacaUCGGGGa--CCCCUGCaaCuGG- -5'
28434 3' -57.4 NC_005946.1 + 68462 0.69 0.598783
Target:  5'- aUCCUGaucugcuGCCCCUGGGuaaagaggguaaaGGCGUUuACCc -3'
miRNA:   3'- -AGGACau-----CGGGGACCC-------------CUGCAAcUGG- -5'
28434 3' -57.4 NC_005946.1 + 14902 0.7 0.538735
Target:  5'- gUCUUGUGGCCCgcuaUGGGaGACGgaGcCCu -3'
miRNA:   3'- -AGGACAUCGGGg---ACCC-CUGCaaCuGG- -5'
28434 3' -57.4 NC_005946.1 + 15544 0.71 0.51882
Target:  5'- gUCCUGUAGCCCaUGuaGAUGagGGCCg -3'
miRNA:   3'- -AGGACAUCGGGgACccCUGCaaCUGG- -5'
28434 3' -57.4 NC_005946.1 + 49274 0.71 0.508971
Target:  5'- cUCCUGUAGCCCgacGGGACGa--ACCu -3'
miRNA:   3'- -AGGACAUCGGGgacCCCUGCaacUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.