miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28434 5' -52.3 NC_005946.1 + 13152 0.66 0.951518
Target:  5'- -aGGCUGGugGcuguUCCCAgGGGCAGGGAc -3'
miRNA:   3'- ccCCGGCUugU----AGGGUaUCUGUCUUU- -5'
28434 5' -52.3 NC_005946.1 + 61635 0.66 0.940882
Target:  5'- gGGGGCCuuuuucggcagggaGGACAgcaCgGUGGACAGGGu -3'
miRNA:   3'- -CCCCGG--------------CUUGUag-GgUAUCUGUCUUu -5'
28434 5' -52.3 NC_005946.1 + 43680 0.66 0.937368
Target:  5'- -cGGCC-AGgGUCCCGUAGAgGGAc- -3'
miRNA:   3'- ccCCGGcUUgUAGGGUAUCUgUCUuu -5'
28434 5' -52.3 NC_005946.1 + 72721 0.66 0.937368
Target:  5'- cGGGGUCc-GCGUCCguggaCGUGGACGGGGu -3'
miRNA:   3'- -CCCCGGcuUGUAGG-----GUAUCUGUCUUu -5'
28434 5' -52.3 NC_005946.1 + 103764 0.68 0.901873
Target:  5'- cGGGGCUG-ACGUaCCCAUuGGAgGGGu- -3'
miRNA:   3'- -CCCCGGCuUGUA-GGGUA-UCUgUCUuu -5'
28434 5' -52.3 NC_005946.1 + 83942 0.68 0.89503
Target:  5'- aGGGCagaguggagGGACGUCCUggGGACAGAc- -3'
miRNA:   3'- cCCCGg--------CUUGUAGGGuaUCUGUCUuu -5'
28434 5' -52.3 NC_005946.1 + 53456 0.68 0.880576
Target:  5'- aGGGuuGuAGCGU-CCGUAGACGGAc- -3'
miRNA:   3'- cCCCggC-UUGUAgGGUAUCUGUCUuu -5'
28434 5' -52.3 NC_005946.1 + 71741 0.69 0.865131
Target:  5'- uGGGGCCGGgagGCAacCCCAUgaGGAgGGAc- -3'
miRNA:   3'- -CCCCGGCU---UGUa-GGGUA--UCUgUCUuu -5'
28434 5' -52.3 NC_005946.1 + 37223 0.69 0.865131
Target:  5'- uGGGGCUuGACAugcaccaggUCCCugGGACGGAAGc -3'
miRNA:   3'- -CCCCGGcUUGU---------AGGGuaUCUGUCUUU- -5'
28434 5' -52.3 NC_005946.1 + 49430 0.69 0.82163
Target:  5'- aGGGCCcuggaggGGACgggGUCCuCGUAGACGGGAGg -3'
miRNA:   3'- cCCCGG-------CUUG---UAGG-GUAUCUGUCUUU- -5'
28434 5' -52.3 NC_005946.1 + 102914 0.72 0.670862
Target:  5'- aGGGGCCGGcAgGUUUCAggggAGACAGggGu -3'
miRNA:   3'- -CCCCGGCU-UgUAGGGUa---UCUGUCuuU- -5'
28434 5' -52.3 NC_005946.1 + 86329 1.09 0.003871
Target:  5'- aGGGGCCGAACAUCCCAUAGACAGAAAg -3'
miRNA:   3'- -CCCCGGCUUGUAGGGUAUCUGUCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.