miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28436 3' -57 NC_005946.1 + 26451 0.66 0.817458
Target:  5'- uGACGGgCUuGGucaagaccaccccgcAGAGGUCCCUGUccucgggaGCCg -3'
miRNA:   3'- -CUGCCaGAcUC---------------UCUCCAGGGACG--------UGG- -5'
28436 3' -57 NC_005946.1 + 35243 0.66 0.813937
Target:  5'- gGACGG-CUGcGGGAuGUCCUcGUACCu -3'
miRNA:   3'- -CUGCCaGACuCUCUcCAGGGaCGUGG- -5'
28436 3' -57 NC_005946.1 + 46316 0.67 0.763964
Target:  5'- aACGGacugcgacuucucCUGAGGGGGGUCCacaUGCcguACCg -3'
miRNA:   3'- cUGCCa------------GACUCUCUCCAGGg--ACG---UGG- -5'
28436 3' -57 NC_005946.1 + 74745 0.68 0.688028
Target:  5'- uACGGgUUGGGuAGAGaGUCCCUGUugUu -3'
miRNA:   3'- cUGCCaGACUC-UCUC-CAGGGACGugG- -5'
28436 3' -57 NC_005946.1 + 10690 0.68 0.666382
Target:  5'- --gGGUCUGAcGgccagcagguccaGGAGGUCCCUccugacgaacgaGCACCc -3'
miRNA:   3'- cugCCAGACU-C-------------UCUCCAGGGA------------CGUGG- -5'
28436 3' -57 NC_005946.1 + 86521 0.68 0.657061
Target:  5'- --gGGUUccaGGGAGAGGUUCCUGgACUc -3'
miRNA:   3'- cugCCAGa--CUCUCUCCAGGGACgUGG- -5'
28436 3' -57 NC_005946.1 + 102346 0.69 0.646685
Target:  5'- uGGCGGUgaGGGucucgccguGGAGGUCCgUGUagACCa -3'
miRNA:   3'- -CUGCCAgaCUC---------UCUCCAGGgACG--UGG- -5'
28436 3' -57 NC_005946.1 + 84009 0.71 0.533518
Target:  5'- cGGCGGgaagGAGGGuGGUgCCUGCuCCg -3'
miRNA:   3'- -CUGCCaga-CUCUCuCCAgGGACGuGG- -5'
28436 3' -57 NC_005946.1 + 26559 0.71 0.513565
Target:  5'- -uUGGcCUGAGGGcAGGUCCCacCACCa -3'
miRNA:   3'- cuGCCaGACUCUC-UCCAGGGacGUGG- -5'
28436 3' -57 NC_005946.1 + 86687 1.12 0.000943
Target:  5'- aGACGGUCUGAGAGAGGUCCCUGCACCa -3'
miRNA:   3'- -CUGCCAGACUCUCUCCAGGGACGUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.