miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28436 5' -58.8 NC_005946.1 + 20859 0.66 0.721634
Target:  5'- gUGGcCCUGAGGGCaaaggCUGCGGcagacgCCGu -3'
miRNA:   3'- gACCaGGACUCCUGg----GACGUCa-----GGCu -5'
28436 5' -58.8 NC_005946.1 + 10951 0.66 0.691434
Target:  5'- cCUGccCCUGAGGAgCCUGUAGgacucuacaCCGGg -3'
miRNA:   3'- -GACcaGGACUCCUgGGACGUCa--------GGCU- -5'
28436 5' -58.8 NC_005946.1 + 92470 0.67 0.671035
Target:  5'- gUGGUCCUcucGAGcaccacGACCCUGUuGUCgGAu -3'
miRNA:   3'- gACCAGGA---CUC------CUGGGACGuCAGgCU- -5'
28436 5' -58.8 NC_005946.1 + 23073 0.67 0.660783
Target:  5'- gCUGGgacCCgGAGGACCCggaGGUCCc- -3'
miRNA:   3'- -GACCa--GGaCUCCUGGGacgUCAGGcu -5'
28436 5' -58.8 NC_005946.1 + 97885 0.67 0.660783
Target:  5'- uUGG-CCggGAGGACCCUgGCuccGUCCu- -3'
miRNA:   3'- gACCaGGa-CUCCUGGGA-CGu--CAGGcu -5'
28436 5' -58.8 NC_005946.1 + 43674 0.67 0.660783
Target:  5'- -gGGUCCcGuagaGGGACCCca-GGUCCGAg -3'
miRNA:   3'- gaCCAGGaC----UCCUGGGacgUCAGGCU- -5'
28436 5' -58.8 NC_005946.1 + 36470 0.67 0.619627
Target:  5'- -gGGUCCUGgucccaaacggcAGGGCCCaagcCGGUCCGu -3'
miRNA:   3'- gaCCAGGAC------------UCCUGGGac--GUCAGGCu -5'
28436 5' -58.8 NC_005946.1 + 47259 0.68 0.609341
Target:  5'- -cGGUCCugaUGAGGACCg---GGUCCGAg -3'
miRNA:   3'- gaCCAGG---ACUCCUGGgacgUCAGGCU- -5'
28436 5' -58.8 NC_005946.1 + 94429 0.71 0.433293
Target:  5'- cCUGGU---GAGGGCCCUGCcuUCCGGa -3'
miRNA:   3'- -GACCAggaCUCCUGGGACGucAGGCU- -5'
28436 5' -58.8 NC_005946.1 + 79614 0.72 0.341251
Target:  5'- uCUGGcCCUGAGGGCCC-GCagAGUCUa- -3'
miRNA:   3'- -GACCaGGACUCCUGGGaCG--UCAGGcu -5'
28436 5' -58.8 NC_005946.1 + 9072 0.78 0.148844
Target:  5'- cCUGG-CCUGGGGACCCUGCGGga-GGu -3'
miRNA:   3'- -GACCaGGACUCCUGGGACGUCaggCU- -5'
28436 5' -58.8 NC_005946.1 + 86653 1.09 0.001105
Target:  5'- gCUGGUCCUGAGGACCCUGCAGUCCGAg -3'
miRNA:   3'- -GACCAGGACUCCUGGGACGUCAGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.