miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28439 3' -52.8 NC_005946.1 + 71774 0.66 0.963059
Target:  5'- gCACgGUCCUGGuggGGAAGGug-UCUCa -3'
miRNA:   3'- gGUGgCAGGGCU---UCUUCCuaaGGAGa -5'
28439 3' -52.8 NC_005946.1 + 60117 0.66 0.95557
Target:  5'- uCCACCGUCCCccAGuAGucugUCCUCc -3'
miRNA:   3'- -GGUGGCAGGGcuUCuUCcua-AGGAGa -5'
28439 3' -52.8 NC_005946.1 + 105849 0.67 0.942511
Target:  5'- uUCAUCGUUCUGAAGGAc--UUCCUCUu -3'
miRNA:   3'- -GGUGGCAGGGCUUCUUccuAAGGAGA- -5'
28439 3' -52.8 NC_005946.1 + 24869 0.67 0.921563
Target:  5'- uCCGUCGUCCCuGggGAugauaggcAGGucUCCUCUg -3'
miRNA:   3'- -GGUGGCAGGG-CuuCU--------UCCuaAGGAGA- -5'
28439 3' -52.8 NC_005946.1 + 94724 0.67 0.915687
Target:  5'- gCACCGUCCUcccaGAGGGUUCCa-- -3'
miRNA:   3'- gGUGGCAGGGcuucUUCCUAAGGaga -5'
28439 3' -52.8 NC_005946.1 + 43022 0.68 0.909555
Target:  5'- gCACCGUCCUcuuGAAGAGcGAcagCCUCg -3'
miRNA:   3'- gGUGGCAGGG---CUUCUUcCUaa-GGAGa -5'
28439 3' -52.8 NC_005946.1 + 85201 0.68 0.896538
Target:  5'- uCCugUGUCCCGGAGAcAGGAUg----- -3'
miRNA:   3'- -GGugGCAGGGCUUCU-UCCUAaggaga -5'
28439 3' -52.8 NC_005946.1 + 77520 0.68 0.889657
Target:  5'- -gGCCGUCCUcAAcGAAGGAgucagCCUCUu -3'
miRNA:   3'- ggUGGCAGGGcUU-CUUCCUaa---GGAGA- -5'
28439 3' -52.8 NC_005946.1 + 13239 0.69 0.872918
Target:  5'- aCCGCCcaggccauagccagGUCCUGGAGGGcGGGUUCC-Ca -3'
miRNA:   3'- -GGUGG--------------CAGGGCUUCUU-CCUAAGGaGa -5'
28439 3' -52.8 NC_005946.1 + 85388 0.7 0.835003
Target:  5'- uCCGCUcacCCCGAAGGAGGAgcCCUg- -3'
miRNA:   3'- -GGUGGca-GGGCUUCUUCCUaaGGAga -5'
28439 3' -52.8 NC_005946.1 + 22062 0.71 0.788969
Target:  5'- cCUGCCgGUCCUGGgauuccuGGuuGGAUUCCUCUc -3'
miRNA:   3'- -GGUGG-CAGGGCU-------UCuuCCUAAGGAGA- -5'
28439 3' -52.8 NC_005946.1 + 104476 0.73 0.6686
Target:  5'- aCGCCGUCuCCcAGGAGGGAUgcgugaaccUCCUCc -3'
miRNA:   3'- gGUGGCAG-GGcUUCUUCCUA---------AGGAGa -5'
28439 3' -52.8 NC_005946.1 + 54420 0.73 0.647473
Target:  5'- gCCAUCGUCaaGAaaAGGAGGAcUCCUCc -3'
miRNA:   3'- -GGUGGCAGggCU--UCUUCCUaAGGAGa -5'
28439 3' -52.8 NC_005946.1 + 90922 1.09 0.004379
Target:  5'- uCCACCGUCCCGAAGAAGGAUUCCUCUc -3'
miRNA:   3'- -GGUGGCAGGGCUUCUUCCUAAGGAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.