miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28439 5' -53.9 NC_005946.1 + 26808 0.66 0.911562
Target:  5'- uGGACAGGAccauggCC-UCCCUGUGCcUGUc -3'
miRNA:   3'- -CCUGUUCUaa----GGaAGGGGCGCGuGCA- -5'
28439 5' -53.9 NC_005946.1 + 72055 0.66 0.911562
Target:  5'- uGGACAGGGgccUCUUUUCCUGCGuUACc- -3'
miRNA:   3'- -CCUGUUCUa--AGGAAGGGGCGC-GUGca -5'
28439 5' -53.9 NC_005946.1 + 13352 0.67 0.898725
Target:  5'- uGGACGGGg--CCUacauaUCCCUGCuGCugGg -3'
miRNA:   3'- -CCUGUUCuaaGGA-----AGGGGCG-CGugCa -5'
28439 5' -53.9 NC_005946.1 + 66593 0.67 0.880565
Target:  5'- cGGACGAGA-UCCUcgaguacgacaccucUCCCuuugagagguuCGUGCACGc -3'
miRNA:   3'- -CCUGUUCUaAGGA---------------AGGG-----------GCGCGUGCa -5'
28439 5' -53.9 NC_005946.1 + 82412 0.67 0.875399
Target:  5'- aGGCAGGAgaaacgUCCUUCCCUucaggcccgagacuGUGCACc- -3'
miRNA:   3'- cCUGUUCUa-----AGGAAGGGG--------------CGCGUGca -5'
28439 5' -53.9 NC_005946.1 + 82505 0.67 0.875399
Target:  5'- aGGCAGGAgaaacgUCCUUCCCUucaggcccaagacuGUGCACc- -3'
miRNA:   3'- cCUGUUCUa-----AGGAAGGGG--------------CGCGUGca -5'
28439 5' -53.9 NC_005946.1 + 21096 0.69 0.820527
Target:  5'- cGGCGAGGUUC--UCCCCGC-CACa- -3'
miRNA:   3'- cCUGUUCUAAGgaAGGGGCGcGUGca -5'
28439 5' -53.9 NC_005946.1 + 62781 0.69 0.820527
Target:  5'- aGGcCAGGGcagCCUUCCaCGCGUugGUg -3'
miRNA:   3'- -CCuGUUCUaa-GGAAGGgGCGCGugCA- -5'
28439 5' -53.9 NC_005946.1 + 19283 0.71 0.714066
Target:  5'- cGGGCAuGAUcuggugCCUUCCgCCGUGCAgGg -3'
miRNA:   3'- -CCUGUuCUAa-----GGAAGG-GGCGCGUgCa -5'
28439 5' -53.9 NC_005946.1 + 22943 0.71 0.702702
Target:  5'- -cACAGGGUUCCUggugggaUCCCUGCaaaaggccucGCACGUg -3'
miRNA:   3'- ccUGUUCUAAGGA-------AGGGGCG----------CGUGCA- -5'
28439 5' -53.9 NC_005946.1 + 90888 1.09 0.003252
Target:  5'- gGGACAAGAUUCCUUCCCCGCGCACGUc -3'
miRNA:   3'- -CCUGUUCUAAGGAAGGGGCGCGUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.