Results 21 - 22 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28441 | 5' | -47.2 | NC_005946.1 | + | 95107 | 0.67 | 0.997906 |
Target: 5'- uGAGGAUcgcucccaccagGGACAACACccAGGCGgcaGACg -3' miRNA: 3'- gCUCUUA------------UCUGUUGUGu-UCUGCg--CUG- -5' |
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28441 | 5' | -47.2 | NC_005946.1 | + | 104283 | 0.68 | 0.995772 |
Target: 5'- uGAGAAgAGA-AACACAGauACGCGACg -3' miRNA: 3'- gCUCUUaUCUgUUGUGUUc-UGCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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