miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28443 3' -58.4 NC_005946.1 + 23749 0.66 0.677913
Target:  5'- gGCCUGAUCgggagacauuGUCGGGAGGAC-CCUGu- -3'
miRNA:   3'- -UGGACUGG----------CGGUUCUCCUGcGGACuu -5'
28443 3' -58.4 NC_005946.1 + 55804 0.66 0.677913
Target:  5'- cGCCU--CCGCCAAGAGGugaGCGUCUu-- -3'
miRNA:   3'- -UGGAcuGGCGGUUCUCC---UGCGGAcuu -5'
28443 3' -58.4 NC_005946.1 + 95388 0.66 0.667507
Target:  5'- gGCCaaGACCGUCAGGGGGACcGUCa--- -3'
miRNA:   3'- -UGGa-CUGGCGGUUCUCCUG-CGGacuu -5'
28443 3' -58.4 NC_005946.1 + 69612 0.66 0.657072
Target:  5'- cCCUGuCCuCCAGGAGG--GCCUGAGc -3'
miRNA:   3'- uGGACuGGcGGUUCUCCugCGGACUU- -5'
28443 3' -58.4 NC_005946.1 + 20712 0.67 0.615208
Target:  5'- aGCCUGGCCgGCCucGAGG-C-CCUGGu -3'
miRNA:   3'- -UGGACUGG-CGGuuCUCCuGcGGACUu -5'
28443 3' -58.4 NC_005946.1 + 12607 0.67 0.614162
Target:  5'- aGCCUG-CC-CCAGGAGGugGaggagcuCCUGAc -3'
miRNA:   3'- -UGGACuGGcGGUUCUCCugC-------GGACUu -5'
28443 3' -58.4 NC_005946.1 + 35939 0.68 0.58392
Target:  5'- gGCC--GCCGCCAGGgcccucgcagcGGGACGUUUGGAa -3'
miRNA:   3'- -UGGacUGGCGGUUC-----------UCCUGCGGACUU- -5'
28443 3' -58.4 NC_005946.1 + 23159 0.68 0.58392
Target:  5'- cCCUGGCCGCUcc--GGACGCCUc-- -3'
miRNA:   3'- uGGACUGGCGGuucuCCUGCGGAcuu -5'
28443 3' -58.4 NC_005946.1 + 41496 0.68 0.573554
Target:  5'- gACCUGuGCCGCCAcGGGGAC-CCg--- -3'
miRNA:   3'- -UGGAC-UGGCGGUuCUCCUGcGGacuu -5'
28443 3' -58.4 NC_005946.1 + 16198 0.68 0.572519
Target:  5'- cGCCauggaGGCCGCCGAGGcagccauGGACGCCa--- -3'
miRNA:   3'- -UGGa----CUGGCGGUUCU-------CCUGCGGacuu -5'
28443 3' -58.4 NC_005946.1 + 73261 0.68 0.563231
Target:  5'- gACCUGGCCaaCAAGAggguGGACGCCa--- -3'
miRNA:   3'- -UGGACUGGcgGUUCU----CCUGCGGacuu -5'
28443 3' -58.4 NC_005946.1 + 101206 0.69 0.522505
Target:  5'- aGCgaGACUGCUAcaAGAGGGCgGCCUGu- -3'
miRNA:   3'- -UGgaCUGGCGGU--UCUCCUG-CGGACuu -5'
28443 3' -58.4 NC_005946.1 + 14654 0.7 0.435681
Target:  5'- cCCUGGCUcaGCCGGGGGGAgGCCg--- -3'
miRNA:   3'- uGGACUGG--CGGUUCUCCUgCGGacuu -5'
28443 3' -58.4 NC_005946.1 + 35901 0.71 0.417527
Target:  5'- uCCUGGCCGUCcuGAGGAUGCaaGAc -3'
miRNA:   3'- uGGACUGGCGGuuCUCCUGCGgaCUu -5'
28443 3' -58.4 NC_005946.1 + 56351 0.71 0.399841
Target:  5'- uACaUGGCCGCCAgccuGGAGGACGCUg--- -3'
miRNA:   3'- -UGgACUGGCGGU----UCUCCUGCGGacuu -5'
28443 3' -58.4 NC_005946.1 + 94140 1.05 0.001718
Target:  5'- gACCUGACCGCCAAGAGGACGCCUGAAc -3'
miRNA:   3'- -UGGACUGGCGGUUCUCCUGCGGACUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.