miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28443 5' -61.7 NC_005946.1 + 48493 0.66 0.601475
Target:  5'- cUCCUgacCCAGGAcccUCCUgaggaagaugagGGCUCCCuCUGGc -3'
miRNA:   3'- -AGGA---GGUCCU---AGGG------------UCGAGGGcGGCC- -5'
28443 5' -61.7 NC_005946.1 + 35995 0.66 0.601475
Target:  5'- gCCUCCAGGGcCUCGGCgUCCaUGUCaGGc -3'
miRNA:   3'- aGGAGGUCCUaGGGUCG-AGG-GCGG-CC- -5'
28443 5' -61.7 NC_005946.1 + 25477 0.66 0.57163
Target:  5'- gUCC-CUGGGAgccuacgaCCAGCUCCUgGCCGa -3'
miRNA:   3'- -AGGaGGUCCUag------GGUCGAGGG-CGGCc -5'
28443 5' -61.7 NC_005946.1 + 21624 0.67 0.542152
Target:  5'- -aCUCCgAGGAgagCUCAGCgcCCUGUCGGc -3'
miRNA:   3'- agGAGG-UCCUa--GGGUCGa-GGGCGGCC- -5'
28443 5' -61.7 NC_005946.1 + 10127 0.67 0.532436
Target:  5'- aCCUCUgAGGGUCCauGCcgugCCCGCCGu -3'
miRNA:   3'- aGGAGG-UCCUAGGguCGa---GGGCGGCc -5'
28443 5' -61.7 NC_005946.1 + 43917 0.67 0.532436
Target:  5'- cCCUCaCGucGUCCCAGUggCCCGCCa- -3'
miRNA:   3'- aGGAG-GUccUAGGGUCGa-GGGCGGcc -5'
28443 5' -61.7 NC_005946.1 + 41421 0.67 0.522782
Target:  5'- gUCCg-CGGGGUCCCGGCggaCCGUCc- -3'
miRNA:   3'- -AGGagGUCCUAGGGUCGag-GGCGGcc -5'
28443 5' -61.7 NC_005946.1 + 86799 0.67 0.522782
Target:  5'- ---gCCGGGA-CCCuGCUCCUGCCc- -3'
miRNA:   3'- aggaGGUCCUaGGGuCGAGGGCGGcc -5'
28443 5' -61.7 NC_005946.1 + 11294 0.67 0.513197
Target:  5'- gUCUCCGcaGUgcaCCCGGCUCCCGUCaGGa -3'
miRNA:   3'- aGGAGGUccUA---GGGUCGAGGGCGG-CC- -5'
28443 5' -61.7 NC_005946.1 + 62163 0.68 0.484895
Target:  5'- -gUUCCAGGGUCCUGGgaugcaaaccgcCUCCCGCucaCGGc -3'
miRNA:   3'- agGAGGUCCUAGGGUC------------GAGGGCG---GCC- -5'
28443 5' -61.7 NC_005946.1 + 82975 0.68 0.475626
Target:  5'- gUCCggagCCcauaAGGAUCCCccucAGC-CCCGgCGGg -3'
miRNA:   3'- -AGGa---GG----UCCUAGGG----UCGaGGGCgGCC- -5'
28443 5' -61.7 NC_005946.1 + 44244 0.68 0.465534
Target:  5'- gUCUCUAGGAUCCUcucccagAGCUCCCuGgCGc -3'
miRNA:   3'- aGGAGGUCCUAGGG-------UCGAGGG-CgGCc -5'
28443 5' -61.7 NC_005946.1 + 102590 0.68 0.45736
Target:  5'- uUCCUCCuGGAcUCCAuGUcCCCGCCa- -3'
miRNA:   3'- -AGGAGGuCCUaGGGU-CGaGGGCGGcc -5'
28443 5' -61.7 NC_005946.1 + 86619 0.68 0.448369
Target:  5'- cCCUCCAGGuccucUCCCuccGCUuccUCCGCCa- -3'
miRNA:   3'- aGGAGGUCCu----AGGGu--CGA---GGGCGGcc -5'
28443 5' -61.7 NC_005946.1 + 64800 0.69 0.413418
Target:  5'- gCC-CCuGGGUCCCAcGCgCCCGaCUGGa -3'
miRNA:   3'- aGGaGGuCCUAGGGU-CGaGGGC-GGCC- -5'
28443 5' -61.7 NC_005946.1 + 34608 0.69 0.404946
Target:  5'- gUCCUCCGuGGAcgUCCCcGCgCCCguGCUGGa -3'
miRNA:   3'- -AGGAGGU-CCU--AGGGuCGaGGG--CGGCC- -5'
28443 5' -61.7 NC_005946.1 + 50982 0.7 0.356481
Target:  5'- aUCCUCCcuGuuuGUCCCugcuacGGCUCCCGCCc- -3'
miRNA:   3'- -AGGAGGucC---UAGGG------UCGAGGGCGGcc -5'
28443 5' -61.7 NC_005946.1 + 16078 0.71 0.319315
Target:  5'- cUCCUCgAGGAUCCCucuuGCgacCCCgauGCCGa -3'
miRNA:   3'- -AGGAGgUCCUAGGGu---CGa--GGG---CGGCc -5'
28443 5' -61.7 NC_005946.1 + 9598 0.71 0.31224
Target:  5'- gCCUCCAGGAUCUUggAGCacaCCgCGUCGGc -3'
miRNA:   3'- aGGAGGUCCUAGGG--UCGa--GG-GCGGCC- -5'
28443 5' -61.7 NC_005946.1 + 94105 1.09 0.000619
Target:  5'- gUCCUCCAGGAUCCCAGCUCCCGCCGGc -3'
miRNA:   3'- -AGGAGGUCCUAGGGUCGAGGGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.