miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28445 5' -59.6 NC_005946.1 + 55921 0.66 0.665467
Target:  5'- aGUgagGUGgGCCACCAgCCUGGugucGCCg -3'
miRNA:   3'- aCGa--CACgCGGUGGUaGGACUcc--CGG- -5'
28445 5' -59.6 NC_005946.1 + 4660 0.66 0.648998
Target:  5'- gUGUUGUccaGCCACC-UCCUGuccacaaaggcggugGGGGUCa -3'
miRNA:   3'- -ACGACAcg-CGGUGGuAGGAC---------------UCCCGG- -5'
28445 5' -59.6 NC_005946.1 + 16026 0.66 0.62424
Target:  5'- aGCgGUaCGCCACU---CUGAGGGUCa -3'
miRNA:   3'- aCGaCAcGCGGUGGuagGACUCCCGG- -5'
28445 5' -59.6 NC_005946.1 + 56124 0.66 0.613928
Target:  5'- gGCUGUG-GCCGaaGUg--GAGGGCCa -3'
miRNA:   3'- aCGACACgCGGUggUAggaCUCCCGG- -5'
28445 5' -59.6 NC_005946.1 + 20873 0.66 0.613928
Target:  5'- aGCaG-GcCGCCGCgGUggcCCUGAGGGCa -3'
miRNA:   3'- aCGaCaC-GCGGUGgUA---GGACUCCCGg -5'
28445 5' -59.6 NC_005946.1 + 78990 0.67 0.60363
Target:  5'- gGCg--GCGUaCGCCAgggCC-GGGGGCCa -3'
miRNA:   3'- aCGacaCGCG-GUGGUa--GGaCUCCCGG- -5'
28445 5' -59.6 NC_005946.1 + 52931 0.69 0.455337
Target:  5'- aUGCUGUcCGCUcCCGUCgUGAGaGCCu -3'
miRNA:   3'- -ACGACAcGCGGuGGUAGgACUCcCGG- -5'
28445 5' -59.6 NC_005946.1 + 12528 0.7 0.419058
Target:  5'- aGgaGguaGCGaCUGCCAUCCUGAuGGCCu -3'
miRNA:   3'- aCgaCa--CGC-GGUGGUAGGACUcCCGG- -5'
28445 5' -59.6 NC_005946.1 + 8931 0.71 0.344226
Target:  5'- gUGCaggGUGgGCUGCC-UgUUGAGGGCCa -3'
miRNA:   3'- -ACGa--CACgCGGUGGuAgGACUCCCGG- -5'
28445 5' -59.6 NC_005946.1 + 30152 0.72 0.314192
Target:  5'- cUGUUG-GCcuuugccuuuGCCACCucucUCUUGAGGGCCu -3'
miRNA:   3'- -ACGACaCG----------CGGUGGu---AGGACUCCCGG- -5'
28445 5' -59.6 NC_005946.1 + 72807 0.76 0.188825
Target:  5'- gGUUGUGCugGCCACCGUCaggCUGggaaAGGGCCu -3'
miRNA:   3'- aCGACACG--CGGUGGUAG---GAC----UCCCGG- -5'
28445 5' -59.6 NC_005946.1 + 95063 1.12 0.000476
Target:  5'- aUGCUGUGCGCCACCAUCCUGAGGGCCa -3'
miRNA:   3'- -ACGACACGCGGUGGUAGGACUCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.