miRNA: 3'- gaCU-CCGAGUCUC--AGACCGAguCAGu -5'
miRNA: 3'- gaC-UC-CGAGUCUCAGACCGAgUCagu -5'
miRNA: 3'- -GACUCCGAGUCUCAGACCGAGUCAGU- -5'
Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 28447 | 5' | -55.4 | NC_005946.1 | + | 51645 | 0.7 | 0.589415 |
|
Target: 5'- -aGAcGGCUCAGAGacUCUGGUUguGUUg -3' miRNA: 3'- gaCU-CCGAGUCUC--AGACCGAguCAGu -5' |
|||||||
| 28447 | 5' | -55.4 | NC_005946.1 | + | 31354 | 0.73 | 0.466803 |
|
Target: 5'- -cGuAGcGCUCAGAGUCUGGCUgGGa-- -3' miRNA: 3'- gaC-UC-CGAGUCUCAGACCGAgUCagu -5' |
|||||||
| 28447 | 5' | -55.4 | NC_005946.1 | + | 99790 | 1.09 | 0.001863 |
|
Target: 5'- cCUGAGGCUCAGAGUCUGGCUCAGUCAg -3' miRNA: 3'- -GACUCCGAGUCUCAGACCGAGUCAGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home