miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28448 5' -61.8 NC_005946.1 + 57006 0.66 0.610719
Target:  5'- -cGGGGUGUCUG-GaAGGuccaGGAGCCUGg -3'
miRNA:   3'- gcCCCCGCAGACgCaUCC----CCUUGGGC- -5'
28448 5' -61.8 NC_005946.1 + 13656 0.66 0.580895
Target:  5'- uGGGGauCGgCUGCGgAGGccaGGAACCCGa -3'
miRNA:   3'- gCCCCc-GCaGACGCaUCC---CCUUGGGC- -5'
28448 5' -61.8 NC_005946.1 + 12380 0.66 0.579905
Target:  5'- cCGGGGagcaaacgccaagGUGUaCgacgGcCGUAGGuGGAACCCGg -3'
miRNA:   3'- -GCCCC-------------CGCA-Ga---C-GCAUCC-CCUUGGGC- -5'
28448 5' -61.8 NC_005946.1 + 34440 0.68 0.466219
Target:  5'- gGGGacGGCuauGUCgGCGUAGGuGGGACCgGa -3'
miRNA:   3'- gCCC--CCG---CAGaCGCAUCC-CCUUGGgC- -5'
28448 5' -61.8 NC_005946.1 + 3456 0.69 0.388378
Target:  5'- -cGGGGCGg--GUGUAGGGGucuACgCCGg -3'
miRNA:   3'- gcCCCCGCagaCGCAUCCCCu--UG-GGC- -5'
28448 5' -61.8 NC_005946.1 + 60248 0.7 0.346709
Target:  5'- gGGGGGCaGUCUGCugcuGGGuccacuuuuucggaGAGCCCGu -3'
miRNA:   3'- gCCCCCG-CAGACGcau-CCC--------------CUUGGGC- -5'
28448 5' -61.8 NC_005946.1 + 102200 1.08 0.000726
Target:  5'- uCGGGGGCGUCUGCGUAGGGGAACCCGa -3'
miRNA:   3'- -GCCCCCGCAGACGCAUCCCCUUGGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.