Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28449 | 3' | -63.1 | NC_005946.1 | + | 731 | 0.69 | 0.364633 |
Target: 5'- --gGUCCGaCAGGACCuuGCCGgGGAUCUu -3' miRNA: 3'- ugaCAGGCcGUCCUGG--CGGC-CCUGGG- -5' |
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28449 | 3' | -63.1 | NC_005946.1 | + | 2881 | 0.7 | 0.299377 |
Target: 5'- cCUGUCCucGCAGGA-CGCCGGcugggccacuaGGCCCg -3' miRNA: 3'- uGACAGGc-CGUCCUgGCGGCC-----------CUGGG- -5' |
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28449 | 3' | -63.1 | NC_005946.1 | + | 8934 | 0.67 | 0.473934 |
Target: 5'- uCUGUgCaGGguGGGCUGCCuguugagggccacGGGAUCCc -3' miRNA: 3'- uGACAgG-CCguCCUGGCGG-------------CCCUGGG- -5' |
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28449 | 3' | -63.1 | NC_005946.1 | + | 10293 | 0.66 | 0.531032 |
Target: 5'- ----aCCGGauCGGGAgCGCCGGGGCa- -3' miRNA: 3'- ugacaGGCC--GUCCUgGCGGCCCUGgg -5' |
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28449 | 3' | -63.1 | NC_005946.1 | + | 10422 | 0.67 | 0.429522 |
Target: 5'- ----cCCGGacaCAGGACCGCCGccgcguaGGACCUc -3' miRNA: 3'- ugacaGGCC---GUCCUGGCGGC-------CCUGGG- -5' |
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28449 | 3' | -63.1 | NC_005946.1 | + | 23096 | 0.73 | 0.191928 |
Target: 5'- aGCUGUuuGGgGgucuGGAUgaCGCUGGGACCCg -3' miRNA: 3'- -UGACAggCCgU----CCUG--GCGGCCCUGGG- -5' |
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28449 | 3' | -63.1 | NC_005946.1 | + | 40133 | 0.7 | 0.310977 |
Target: 5'- gGCUcUCCGGCgggcauaaacagagGGGGCCuGaCgGGGACCCu -3' miRNA: 3'- -UGAcAGGCCG--------------UCCUGG-C-GgCCCUGGG- -5' |
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28449 | 3' | -63.1 | NC_005946.1 | + | 40222 | 0.66 | 0.502596 |
Target: 5'- gACUGgguuuggaaGGCAGGACCaUCuGGGCCCu -3' miRNA: 3'- -UGACagg------CCGUCCUGGcGGcCCUGGG- -5' |
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28449 | 3' | -63.1 | NC_005946.1 | + | 41435 | 0.66 | 0.493265 |
Target: 5'- cACggGUCCGuG-AGGuCCGCgGGGuCCCg -3' miRNA: 3'- -UGa-CAGGC-CgUCCuGGCGgCCCuGGG- -5' |
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28449 | 3' | -63.1 | NC_005946.1 | + | 41622 | 0.7 | 0.292711 |
Target: 5'- cCUGUccccuccuaCCGaCGGGGCCGgCGGGACCa -3' miRNA: 3'- uGACA---------GGCcGUCCUGGCgGCCCUGGg -5' |
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28449 | 3' | -63.1 | NC_005946.1 | + | 41751 | 0.72 | 0.24353 |
Target: 5'- --gGUCCaggauGGUGGGGuauCCGUCGGGACCCc -3' miRNA: 3'- ugaCAGG-----CCGUCCU---GGCGGCCCUGGG- -5' |
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28449 | 3' | -63.1 | NC_005946.1 | + | 42381 | 0.71 | 0.255143 |
Target: 5'- uCUGUCUccCGGGACCaaCGGGACCCu -3' miRNA: 3'- uGACAGGccGUCCUGGcgGCCCUGGG- -5' |
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28449 | 3' | -63.1 | NC_005946.1 | + | 43692 | 0.7 | 0.327211 |
Target: 5'- cGCUGUacuuuUCGGcCAGGGucCCGUagaGGGACCCc -3' miRNA: 3'- -UGACA-----GGCC-GUCCU--GGCGg--CCCUGGG- -5' |
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28449 | 3' | -63.1 | NC_005946.1 | + | 49405 | 0.71 | 0.27341 |
Target: 5'- --cGUagaCGGgAGGACCGCCGucGGACCa -3' miRNA: 3'- ugaCAg--GCCgUCCUGGCGGC--CCUGGg -5' |
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28449 | 3' | -63.1 | NC_005946.1 | + | 51787 | 0.7 | 0.317959 |
Target: 5'- aACUGUgCgaGGUugcguuucucaucgAGGACCGUCGGaGGCCCu -3' miRNA: 3'- -UGACAgG--CCG--------------UCCUGGCGGCC-CUGGG- -5' |
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28449 | 3' | -63.1 | NC_005946.1 | + | 60493 | 0.67 | 0.447883 |
Target: 5'- cCUGUgggCCGGaaaaccGGuccccACCGCCGGaGACCCg -3' miRNA: 3'- uGACA---GGCCgu----CC-----UGGCGGCC-CUGGG- -5' |
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28449 | 3' | -63.1 | NC_005946.1 | + | 61189 | 0.7 | 0.30616 |
Target: 5'- gGCUGagggccaaCGGgGGGACCGuCCuGGACCCc -3' miRNA: 3'- -UGACag------GCCgUCCUGGC-GGcCCUGGG- -5' |
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28449 | 3' | -63.1 | NC_005946.1 | + | 67565 | 0.7 | 0.320077 |
Target: 5'- gGCUGgugagCUGG-AGGACCgGCUGGG-CCCu -3' miRNA: 3'- -UGACa----GGCCgUCCUGG-CGGCCCuGGG- -5' |
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28449 | 3' | -63.1 | NC_005946.1 | + | 75827 | 0.66 | 0.519583 |
Target: 5'- -aUGgcgUCGGCgAGGACCacguccuGCCGGGcuauggcGCCCg -3' miRNA: 3'- ugACa--GGCCG-UCCUGG-------CGGCCC-------UGGG- -5' |
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28449 | 3' | -63.1 | NC_005946.1 | + | 76755 | 0.75 | 0.153943 |
Target: 5'- -aUGUUCGGCAGGGCaggcaggaacggCGCaaaGGGGCCCc -3' miRNA: 3'- ugACAGGCCGUCCUG------------GCGg--CCCUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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