miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28450 3' -52.4 NC_005946.1 + 42395 0.66 0.961126
Target:  5'- gGGUcuUUGgGACcuCUGUCUCCCGGGAc- -3'
miRNA:   3'- -UCA--AAUgUUGc-GGCAGAGGGUCCUcc -5'
28450 3' -52.4 NC_005946.1 + 80411 0.66 0.957345
Target:  5'- gAGUcguCGACccucuuGCCGUCUCCCGcaaaGAGGa -3'
miRNA:   3'- -UCAaauGUUG------CGGCAGAGGGUc---CUCC- -5'
28450 3' -52.4 NC_005946.1 + 12545 0.66 0.949047
Target:  5'- ----gGCaAGCGCCaugC-CCCAGGAGGu -3'
miRNA:   3'- ucaaaUG-UUGCGGca-GaGGGUCCUCC- -5'
28450 3' -52.4 NC_005946.1 + 72851 0.68 0.911957
Target:  5'- ----aACAugGCCGagggggcgggguUCUCCCuGGAGa -3'
miRNA:   3'- ucaaaUGUugCGGC------------AGAGGGuCCUCc -5'
28450 3' -52.4 NC_005946.1 + 3032 0.69 0.885111
Target:  5'- -----cCGACGUCGUCccggccUCCAGGAGGg -3'
miRNA:   3'- ucaaauGUUGCGGCAGa-----GGGUCCUCC- -5'
28450 3' -52.4 NC_005946.1 + 50009 0.69 0.877781
Target:  5'- aGGgcUGCGAaaGCCGcagaCUCCCAGGuGGg -3'
miRNA:   3'- -UCaaAUGUUg-CGGCa---GAGGGUCCuCC- -5'
28450 3' -52.4 NC_005946.1 + 23804 0.69 0.867897
Target:  5'- -----cCAGCGUgGUCUggagggacugcaggCCCAGGAGGa -3'
miRNA:   3'- ucaaauGUUGCGgCAGA--------------GGGUCCUCC- -5'
28450 3' -52.4 NC_005946.1 + 22126 0.7 0.846142
Target:  5'- --cUUGCAGCGCCGUCagaacacucUCUCucGAGGg -3'
miRNA:   3'- ucaAAUGUUGCGGCAG---------AGGGucCUCC- -5'
28450 3' -52.4 NC_005946.1 + 73414 0.7 0.837686
Target:  5'- ----cGCAACGCCaagggCUCCaAGGAGGa -3'
miRNA:   3'- ucaaaUGUUGCGGca---GAGGgUCCUCC- -5'
28450 3' -52.4 NC_005946.1 + 56356 0.7 0.829027
Target:  5'- cGUggUACAugGCCGcCagCCuGGAGGa -3'
miRNA:   3'- uCAa-AUGUugCGGCaGagGGuCCUCC- -5'
28450 3' -52.4 NC_005946.1 + 36622 0.7 0.811135
Target:  5'- ---cUGgGACGCCGUCUCCCAugccGAGu -3'
miRNA:   3'- ucaaAUgUUGCGGCAGAGGGUc---CUCc -5'
28450 3' -52.4 NC_005946.1 + 71551 0.7 0.801919
Target:  5'- ---aUGCGGaGCUGUCcugaCCCAGGAGGa -3'
miRNA:   3'- ucaaAUGUUgCGGCAGa---GGGUCCUCC- -5'
28450 3' -52.4 NC_005946.1 + 2641 0.71 0.763487
Target:  5'- gGGgcUGCAGCGCCuUCacaCCCAGGGGc -3'
miRNA:   3'- -UCaaAUGUUGCGGcAGa--GGGUCCUCc -5'
28450 3' -52.4 NC_005946.1 + 104485 1.12 0.002989
Target:  5'- cAGUUUACAACGCCGUCUCCCAGGAGGg -3'
miRNA:   3'- -UCAAAUGUUGCGGCAGAGGGUCCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.