miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28452 5' -56.1 NC_005946.1 + 2829 0.7 0.566416
Target:  5'- gUCCAAggGGUCCCaaggGUGGAGUGGGAg-- -3'
miRNA:   3'- -GGGUU--UCGGGGg---CACCUCACCUUguu -5'
28452 5' -56.1 NC_005946.1 + 6944 0.69 0.629314
Target:  5'- aCCAGAGCCCUgauUGUGGGGUGcaGGugAGa -3'
miRNA:   3'- gGGUUUCGGGG---GCACCUCAC--CUugUU- -5'
28452 5' -56.1 NC_005946.1 + 13616 0.67 0.782416
Target:  5'- cUCCAGA-CCCCUGaGGAGUGuGGACu- -3'
miRNA:   3'- -GGGUUUcGGGGGCaCCUCAC-CUUGuu -5'
28452 5' -56.1 NC_005946.1 + 22949 0.67 0.782416
Target:  5'- cCCCucAGCCCCgGcGGGGaUGGAAa-- -3'
miRNA:   3'- -GGGuuUCGGGGgCaCCUC-ACCUUguu -5'
28452 5' -56.1 NC_005946.1 + 23039 0.68 0.681853
Target:  5'- gUCCAGGGUCCCCGUGGGaccuGUccacGGGucGCAGa -3'
miRNA:   3'- -GGGUUUCGGGGGCACCU----CA----CCU--UGUU- -5'
28452 5' -56.1 NC_005946.1 + 25973 0.68 0.723155
Target:  5'- gCCGAGGCgCCCaCGgcGGGG-GGGACAAu -3'
miRNA:   3'- gGGUUUCG-GGG-GCa-CCUCaCCUUGUU- -5'
28452 5' -56.1 NC_005946.1 + 33391 0.73 0.401588
Target:  5'- uCCCccGGCCCCCGaGGAGaGGGAUAu -3'
miRNA:   3'- -GGGuuUCGGGGGCaCCUCaCCUUGUu -5'
28452 5' -56.1 NC_005946.1 + 43495 0.66 0.819198
Target:  5'- uUCCAuGGaCCCCGcGGGGUucgaGGAGCAGg -3'
miRNA:   3'- -GGGUuUCgGGGGCaCCUCA----CCUUGUU- -5'
28452 5' -56.1 NC_005946.1 + 45763 0.69 0.671394
Target:  5'- gUCAGGGCUgCCGUGGuGGUGGggUc- -3'
miRNA:   3'- gGGUUUCGGgGGCACC-UCACCuuGuu -5'
28452 5' -56.1 NC_005946.1 + 56470 0.66 0.81025
Target:  5'- cUCCAGGGCCC---UGGAG-GGGACGGg -3'
miRNA:   3'- -GGGUUUCGGGggcACCUCaCCUUGUU- -5'
28452 5' -56.1 NC_005946.1 + 58838 0.71 0.525356
Target:  5'- cCCCAucauGCCCCUGUGGcggugAGUGGccACAAa -3'
miRNA:   3'- -GGGUuu--CGGGGGCACC-----UCACCu-UGUU- -5'
28452 5' -56.1 NC_005946.1 + 61675 0.67 0.781464
Target:  5'- uCCCAGAGCUCCC-UGGcgcucacAGUGuGAGCc- -3'
miRNA:   3'- -GGGUUUCGGGGGcACC-------UCAC-CUUGuu -5'
28452 5' -56.1 NC_005946.1 + 86091 0.67 0.782416
Target:  5'- cCCCAggacaggcucAGGCCCaCCGUGGAGa--AGCAGg -3'
miRNA:   3'- -GGGU----------UUCGGG-GGCACCUCaccUUGUU- -5'
28452 5' -56.1 NC_005946.1 + 95262 0.67 0.753294
Target:  5'- cCCCAccAGGUcccucaccucauCCCCG-GGAGUGGAGgGGu -3'
miRNA:   3'- -GGGU--UUCG------------GGGGCaCCUCACCUUgUU- -5'
28452 5' -56.1 NC_005946.1 + 97730 0.69 0.629314
Target:  5'- aCC--AGCCUCC-UGGGGUGGAACc- -3'
miRNA:   3'- gGGuuUCGGGGGcACCUCACCUUGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.