miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28455 5' -53.8 NC_005946.1 + 38350 0.66 0.893888
Target:  5'- -uGGAGGaccGGCUGGGCccuGCACUg--- -3'
miRNA:   3'- guCCUCCa--CCGACCUGu--UGUGGuaaa -5'
28455 5' -53.8 NC_005946.1 + 85620 0.66 0.893888
Target:  5'- -cGGGGGcaUGGUgucGGACAugACCAa-- -3'
miRNA:   3'- guCCUCC--ACCGa--CCUGUugUGGUaaa -5'
28455 5' -53.8 NC_005946.1 + 92080 0.66 0.886741
Target:  5'- gGGGAGGUGcUUGGA-GGCACCGg-- -3'
miRNA:   3'- gUCCUCCACcGACCUgUUGUGGUaaa -5'
28455 5' -53.8 NC_005946.1 + 92240 0.66 0.886741
Target:  5'- aCAGGAGGUGG--GGAuCGGCugCGg-- -3'
miRNA:   3'- -GUCCUCCACCgaCCU-GUUGugGUaaa -5'
28455 5' -53.8 NC_005946.1 + 7424 0.66 0.871693
Target:  5'- -uGGAGGUGGCauaguaccaGGGCucCACCAg-- -3'
miRNA:   3'- guCCUCCACCGa--------CCUGuuGUGGUaaa -5'
28455 5' -53.8 NC_005946.1 + 17563 0.67 0.855681
Target:  5'- aAGGAGGcGGCcGGGCAgGCACUg--- -3'
miRNA:   3'- gUCCUCCaCCGaCCUGU-UGUGGuaaa -5'
28455 5' -53.8 NC_005946.1 + 45518 0.68 0.80246
Target:  5'- uCAGGAGGgcagaGGC-GGuCAGCGCCGc-- -3'
miRNA:   3'- -GUCCUCCa----CCGaCCuGUUGUGGUaaa -5'
28455 5' -53.8 NC_005946.1 + 10392 0.68 0.783232
Target:  5'- gAGGAGGaGGCggaGGACGACccGCCGc-- -3'
miRNA:   3'- gUCCUCCaCCGa--CCUGUUG--UGGUaaa -5'
28455 5' -53.8 NC_005946.1 + 80123 0.68 0.782254
Target:  5'- -cGGAGGUGG-UGGACGACgaggacgacgaggACCAa-- -3'
miRNA:   3'- guCCUCCACCgACCUGUUG-------------UGGUaaa -5'
28455 5' -53.8 NC_005946.1 + 92285 0.69 0.753274
Target:  5'- uCAGGAGGaUGGCcGGGCAGaACCu--- -3'
miRNA:   3'- -GUCCUCC-ACCGaCCUGUUgUGGuaaa -5'
28455 5' -53.8 NC_005946.1 + 11232 0.69 0.722236
Target:  5'- gAGGAGGUGGUacgUGGACAACu------ -3'
miRNA:   3'- gUCCUCCACCG---ACCUGUUGugguaaa -5'
28455 5' -53.8 NC_005946.1 + 93115 0.7 0.690416
Target:  5'- gCAGGAGGUacgucaacaGGUggggGGACGGCGCUGUg- -3'
miRNA:   3'- -GUCCUCCA---------CCGa---CCUGUUGUGGUAaa -5'
28455 5' -53.8 NC_005946.1 + 11877 0.72 0.560918
Target:  5'- gGGGAGGaGGCUGGugAuuGCCAg-- -3'
miRNA:   3'- gUCCUCCaCCGACCugUugUGGUaaa -5'
28455 5' -53.8 NC_005946.1 + 47664 0.74 0.46805
Target:  5'- -uGGAGGUGGUgGGACccAACACCAc-- -3'
miRNA:   3'- guCCUCCACCGaCCUG--UUGUGGUaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.