miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28459 5' -59.5 NC_005946.1 + 44882 0.66 0.672022
Target:  5'- uCCUCacagCCUGC-GCcucGaACCCGACGCCAc -3'
miRNA:   3'- cGGAG----GGACGaCGu--C-UGGGUUGCGGU- -5'
28459 5' -59.5 NC_005946.1 + 82557 0.66 0.672022
Target:  5'- cCCUCCCUuguccgugGC-GCAGaACCCAGacCGCCc -3'
miRNA:   3'- cGGAGGGA--------CGaCGUC-UGGGUU--GCGGu -5'
28459 5' -59.5 NC_005946.1 + 30791 0.66 0.661737
Target:  5'- aGCCaCCCUGCcGUagAGGCCCGGgGgCAu -3'
miRNA:   3'- -CGGaGGGACGaCG--UCUGGGUUgCgGU- -5'
28459 5' -59.5 NC_005946.1 + 40884 0.66 0.641103
Target:  5'- cGCCUUgacgCC-GCUGagacuGGACCCGGCGUCGu -3'
miRNA:   3'- -CGGAG----GGaCGACg----UCUGGGUUGCGGU- -5'
28459 5' -59.5 NC_005946.1 + 85014 0.66 0.641103
Target:  5'- gGCCUcagacgCCCUGgaGCAGGCCgCcgcgGugGCCc -3'
miRNA:   3'- -CGGA------GGGACgaCGUCUGG-G----UugCGGu -5'
28459 5' -59.5 NC_005946.1 + 94554 0.66 0.63077
Target:  5'- cGgCUCUCacggGCAGACCCGcCGCCAc -3'
miRNA:   3'- -CgGAGGGacgaCGUCUGGGUuGCGGU- -5'
28459 5' -59.5 NC_005946.1 + 80953 0.67 0.610117
Target:  5'- cGCCUCCCgUGCUaGCGGgagcgaucauGCUCAGgGCUc -3'
miRNA:   3'- -CGGAGGG-ACGA-CGUC----------UGGGUUgCGGu -5'
28459 5' -59.5 NC_005946.1 + 103027 0.67 0.610117
Target:  5'- uCCUCgcaggacgCCgGCUGggccacUAGGCCCGACGCCGu -3'
miRNA:   3'- cGGAG--------GGaCGAC------GUCUGGGUUGCGGU- -5'
28459 5' -59.5 NC_005946.1 + 32471 0.67 0.579282
Target:  5'- gGCCUCUgUGgaagaGGACCgCAACGCCAa -3'
miRNA:   3'- -CGGAGGgACgacg-UCUGG-GUUGCGGU- -5'
28459 5' -59.5 NC_005946.1 + 27188 0.67 0.569071
Target:  5'- cGCCUacgggCCCUacucGUUcGCGGcuCCCAACGCCAc -3'
miRNA:   3'- -CGGA-----GGGA----CGA-CGUCu-GGGUUGCGGU- -5'
28459 5' -59.5 NC_005946.1 + 103243 0.68 0.538735
Target:  5'- gGCCggcCCCUGCUacGCcggGGGCUgCAGCGCCu -3'
miRNA:   3'- -CGGa--GGGACGA--CG---UCUGG-GUUGCGGu -5'
28459 5' -59.5 NC_005946.1 + 102551 0.68 0.538735
Target:  5'- uGCCUCCa----GCAGGCCCucAugGCCAc -3'
miRNA:   3'- -CGGAGGgacgaCGUCUGGG--UugCGGU- -5'
28459 5' -59.5 NC_005946.1 + 42239 0.68 0.528743
Target:  5'- cCCUCCCuUGCUaggggcGCAGACCCc-CGCa- -3'
miRNA:   3'- cGGAGGG-ACGA------CGUCUGGGuuGCGgu -5'
28459 5' -59.5 NC_005946.1 + 17274 0.68 0.528743
Target:  5'- gGCCUUCCUgGgaGCGGugUgCAugGCCGu -3'
miRNA:   3'- -CGGAGGGA-CgaCGUCugG-GUugCGGU- -5'
28459 5' -59.5 NC_005946.1 + 6095 0.68 0.528743
Target:  5'- aGCCUCCUUGUcaucCAGACCUGAgGCuCAg -3'
miRNA:   3'- -CGGAGGGACGac--GUCUGGGUUgCG-GU- -5'
28459 5' -59.5 NC_005946.1 + 33647 0.68 0.51882
Target:  5'- gGCUUCCCcgccguaaacUGCU-CAGACagguaCGACGCCAc -3'
miRNA:   3'- -CGGAGGG----------ACGAcGUCUGg----GUUGCGGU- -5'
28459 5' -59.5 NC_005946.1 + 31509 0.69 0.479921
Target:  5'- uGCCUcgucCCCgGaCgagGCAGACCCAAUGUCu -3'
miRNA:   3'- -CGGA----GGGaC-Ga--CGUCUGGGUUGCGGu -5'
28459 5' -59.5 NC_005946.1 + 10090 0.71 0.376235
Target:  5'- uGCCU-CCUGCaagacucacaggggaUGCAGACCCAGagguuucgcaGCCAa -3'
miRNA:   3'- -CGGAgGGACG---------------ACGUCUGGGUUg---------CGGU- -5'
28459 5' -59.5 NC_005946.1 + 104929 0.71 0.356744
Target:  5'- uGCCUCauCCUGUgaGCAGAUuccaCCAGCGCCu -3'
miRNA:   3'- -CGGAG--GGACGa-CGUCUG----GGUUGCGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.