miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28460 5' -55.4 NC_005946.1 + 102048 0.68 0.730876
Target:  5'- uGUCGuGGAGGaUCCCCGGCGucuGCAGg -3'
miRNA:   3'- -CAGU-UCUCCgAGGGGCCGUuc-UGUUa -5'
28460 5' -55.4 NC_005946.1 + 92210 0.66 0.836136
Target:  5'- -cUAGGcAGuGCUCCCUGGCGgucaugccAGACAGg -3'
miRNA:   3'- caGUUC-UC-CGAGGGGCCGU--------UCUGUUa -5'
28460 5' -55.4 NC_005946.1 + 84734 0.77 0.263342
Target:  5'- uUCAAGAGGCUCCUgGGaAAGACGGc -3'
miRNA:   3'- cAGUUCUCCGAGGGgCCgUUCUGUUa -5'
28460 5' -55.4 NC_005946.1 + 80297 0.7 0.624956
Target:  5'- -cCAGGAGGCugUCCCUGGaCAAGcACAu- -3'
miRNA:   3'- caGUUCUCCG--AGGGGCC-GUUC-UGUua -5'
28460 5' -55.4 NC_005946.1 + 65766 0.77 0.238143
Target:  5'- --gGAGAGGCUCUCCGGCGGGcAUAAa -3'
miRNA:   3'- cagUUCUCCGAGGGGCCGUUC-UGUUa -5'
28460 5' -55.4 NC_005946.1 + 63931 0.67 0.771198
Target:  5'- cUCAAGAG--UCCCCGGguGGACc-- -3'
miRNA:   3'- cAGUUCUCcgAGGGGCCguUCUGuua -5'
28460 5' -55.4 NC_005946.1 + 61630 0.68 0.730876
Target:  5'- uUCAGGuaGGGCUCCCCGGUccuGAa--- -3'
miRNA:   3'- cAGUUC--UCCGAGGGGCCGuu-CUguua -5'
28460 5' -55.4 NC_005946.1 + 34619 0.67 0.790584
Target:  5'- -gCAGGAGGCUCCCCacaAAGAUc-- -3'
miRNA:   3'- caGUUCUCCGAGGGGccgUUCUGuua -5'
28460 5' -55.4 NC_005946.1 + 26570 0.66 0.844672
Target:  5'- gGUCGAGGGGUcagagucggCCCUGGauaAAGACGc- -3'
miRNA:   3'- -CAGUUCUCCGa--------GGGGCCg--UUCUGUua -5'
28460 5' -55.4 NC_005946.1 + 26444 0.67 0.771198
Target:  5'- cGUCGAGGGGUgggCCGGguGGACGc- -3'
miRNA:   3'- -CAGUUCUCCGaggGGCCguUCUGUua -5'
28460 5' -55.4 NC_005946.1 + 25975 0.66 0.827397
Target:  5'- ----cGAGGCgCCCaCGGCGggggGGACAAUg -3'
miRNA:   3'- caguuCUCCGaGGG-GCCGU----UCUGUUA- -5'
28460 5' -55.4 NC_005946.1 + 10575 0.66 0.809343
Target:  5'- ----cGAGGCgauuucCCCCGGCGcccguGGACGAg -3'
miRNA:   3'- caguuCUCCGa-----GGGGCCGU-----UCUGUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.