miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28461 3' -56 NC_005946.1 + 87134 0.66 0.859751
Target:  5'- aCCCUCUUCgUCAucGCuaGgGCCaucUUCGUCa -3'
miRNA:   3'- -GGGAGAAGgAGUu-CG--UgCGG---AGGCAG- -5'
28461 3' -56 NC_005946.1 + 40845 0.66 0.843668
Target:  5'- gUCCUCggaCUCGAGCAgGU--CCGUCa -3'
miRNA:   3'- -GGGAGaagGAGUUCGUgCGgaGGCAG- -5'
28461 3' -56 NC_005946.1 + 32340 0.66 0.826783
Target:  5'- gCCC---UCCUCAuggagcAGCACGCgUCCGcCc -3'
miRNA:   3'- -GGGagaAGGAGU------UCGUGCGgAGGCaG- -5'
28461 3' -56 NC_005946.1 + 16725 0.66 0.826783
Target:  5'- gCCUCUgcucgcacaUCCUCAGGCuCGCgaaacgUCCGUg -3'
miRNA:   3'- gGGAGA---------AGGAGUUCGuGCGg-----AGGCAg -5'
28461 3' -56 NC_005946.1 + 59887 0.66 0.826783
Target:  5'- aCCUUgUCCUCGGGCGCcuccccgacaGCCU-UGUCa -3'
miRNA:   3'- gGGAGaAGGAGUUCGUG----------CGGAgGCAG- -5'
28461 3' -56 NC_005946.1 + 71279 0.67 0.80916
Target:  5'- gCCCUCagCCUCu-GguUGuCCUCCGUg -3'
miRNA:   3'- -GGGAGaaGGAGuuCguGC-GGAGGCAg -5'
28461 3' -56 NC_005946.1 + 62756 0.67 0.80826
Target:  5'- gCCUUgacgaCCUCGAGCGCauaagguuuggaaGCCgCCGUCc -3'
miRNA:   3'- gGGAGaa---GGAGUUCGUG-------------CGGaGGCAG- -5'
28461 3' -56 NC_005946.1 + 9634 0.67 0.800092
Target:  5'- aCCCUCUcgggcUCCUCAAagACGUCgUCGUCc -3'
miRNA:   3'- -GGGAGA-----AGGAGUUcgUGCGGaGGCAG- -5'
28461 3' -56 NC_005946.1 + 63968 0.67 0.800092
Target:  5'- gCCCUUUggcCCUCuggGGCcaucccuaccaAUGUCUCCGUCu -3'
miRNA:   3'- -GGGAGAa--GGAGu--UCG-----------UGCGGAGGCAG- -5'
28461 3' -56 NC_005946.1 + 31407 0.67 0.790866
Target:  5'- cUCCUCggCCUCGAcCugGUugacugaaucgaCUCCGUCg -3'
miRNA:   3'- -GGGAGaaGGAGUUcGugCG------------GAGGCAG- -5'
28461 3' -56 NC_005946.1 + 96280 0.67 0.790866
Target:  5'- cCCCg--UCCUCGucauccGC-CGCCUCCGcCu -3'
miRNA:   3'- -GGGagaAGGAGUu-----CGuGCGGAGGCaG- -5'
28461 3' -56 NC_005946.1 + 96348 0.69 0.681651
Target:  5'- aCCgUC-UCCUCGGGC-C-UCUCCGUCa -3'
miRNA:   3'- -GGgAGaAGGAGUUCGuGcGGAGGCAG- -5'
28461 3' -56 NC_005946.1 + 78104 0.7 0.619065
Target:  5'- gCCUCccgucCCUCAGGCACcCCUCCcuaaaGUCg -3'
miRNA:   3'- gGGAGaa---GGAGUUCGUGcGGAGG-----CAG- -5'
28461 3' -56 NC_005946.1 + 31973 0.71 0.567103
Target:  5'- aCCUCUUCCgggaGAGUGCcCCUCCGa- -3'
miRNA:   3'- gGGAGAAGGag--UUCGUGcGGAGGCag -5'
28461 3' -56 NC_005946.1 + 37055 0.72 0.516318
Target:  5'- uCCCUCUcccUCCUCAGcuccCugGCCUCagaGUCc -3'
miRNA:   3'- -GGGAGA---AGGAGUUc---GugCGGAGg--CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.