miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28461 5' -58.4 NC_005946.1 + 81197 0.66 0.785495
Target:  5'- cGGuuUGGGGGggUuggGCCCGgGUGGGGc -3'
miRNA:   3'- cCCucGCCUCCuuG---UGGGCaCGCUCC- -5'
28461 5' -58.4 NC_005946.1 + 101619 0.66 0.785495
Target:  5'- uGGGuGUGGAaGGACACgaggCCGU-CGGGGg -3'
miRNA:   3'- -CCCuCGCCUcCUUGUG----GGCAcGCUCC- -5'
28461 5' -58.4 NC_005946.1 + 69492 0.66 0.77632
Target:  5'- aGGGGCacGGAGGGACGCggaaCC-UGCGGGc -3'
miRNA:   3'- cCCUCG--CCUCCUUGUG----GGcACGCUCc -5'
28461 5' -58.4 NC_005946.1 + 103307 0.66 0.77632
Target:  5'- uGGGAcCuGGGGGAGCAgaCGUGCGccucGGGc -3'
miRNA:   3'- -CCCUcG-CCUCCUUGUggGCACGC----UCC- -5'
28461 5' -58.4 NC_005946.1 + 44584 0.67 0.709037
Target:  5'- -uGAGUGGgacAGGGACGCCUgGUGUGuGGu -3'
miRNA:   3'- ccCUCGCC---UCCUUGUGGG-CACGCuCC- -5'
28461 5' -58.4 NC_005946.1 + 71487 0.67 0.699096
Target:  5'- uGGGAcCGGAGcacauGGACACCaCGggaacGUGAGGg -3'
miRNA:   3'- -CCCUcGCCUC-----CUUGUGG-GCa----CGCUCC- -5'
28461 5' -58.4 NC_005946.1 + 33983 0.67 0.689101
Target:  5'- uGGGAGacgaCGGGGuGAuAgACCCGUcgugcGCGGGGg -3'
miRNA:   3'- -CCCUC----GCCUC-CU-UgUGGGCA-----CGCUCC- -5'
28461 5' -58.4 NC_005946.1 + 93307 0.67 0.683081
Target:  5'- aGGAgGUGGAGGAGCuccugacggugucuCCCGUG-GAGa -3'
miRNA:   3'- cCCU-CGCCUCCUUGu-------------GGGCACgCUCc -5'
28461 5' -58.4 NC_005946.1 + 10396 0.68 0.668979
Target:  5'- aGGAgGCGGAGGAcgACCCGccgcagGUGGGa -3'
miRNA:   3'- cCCU-CGCCUCCUugUGGGCa-----CGCUCc -5'
28461 5' -58.4 NC_005946.1 + 53600 0.68 0.638596
Target:  5'- aGGGuaUGGAGGGAgACCCgGUGCaGAGa -3'
miRNA:   3'- -CCCucGCCUCCUUgUGGG-CACG-CUCc -5'
28461 5' -58.4 NC_005946.1 + 29522 0.68 0.628448
Target:  5'- cGGAGCGGuGGGuccaACCgGUcccaGCGGGGc -3'
miRNA:   3'- cCCUCGCCuCCUug--UGGgCA----CGCUCC- -5'
28461 5' -58.4 NC_005946.1 + 33063 0.69 0.59805
Target:  5'- aGGGGGCGGGguucucccuGGAGaCACCCa-GgGAGGu -3'
miRNA:   3'- -CCCUCGCCU---------CCUU-GUGGGcaCgCUCC- -5'
28461 5' -58.4 NC_005946.1 + 41940 0.69 0.567872
Target:  5'- aGGGAcGCGGGGGGuaucucugACCCGUcuGCGAuGGc -3'
miRNA:   3'- -CCCU-CGCCUCCUug------UGGGCA--CGCU-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.