Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28462 | 3' | -52.9 | NC_005946.1 | + | 3568 | 0.66 | 0.949974 |
Target: 5'- gGUCUCGCCguggaggUCCgugUAGaccACGUCcacgccgugcaGGGCCCc -3' miRNA: 3'- -CGGAGUGG-------AGGa--AUU---UGCAG-----------UCCGGG- -5' |
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28462 | 3' | -52.9 | NC_005946.1 | + | 7269 | 0.69 | 0.857089 |
Target: 5'- aCCUcCACCUCCUgcGGCGgccgugguGGCCUc -3' miRNA: 3'- cGGA-GUGGAGGAauUUGCagu-----CCGGG- -5' |
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28462 | 3' | -52.9 | NC_005946.1 | + | 8945 | 0.69 | 0.848929 |
Target: 5'- cCCUCACCUUCgcaauGACGUCucuGCCa -3' miRNA: 3'- cGGAGUGGAGGaau--UUGCAGuc-CGGg -5' |
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28462 | 3' | -52.9 | NC_005946.1 | + | 10516 | 0.67 | 0.931117 |
Target: 5'- gGCCaagACCgUCagggGGAcCGUCAGGCCCa -3' miRNA: 3'- -CGGag-UGG-AGgaa-UUU-GCAGUCCGGG- -5' |
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28462 | 3' | -52.9 | NC_005946.1 | + | 16724 | 0.67 | 0.925651 |
Target: 5'- aGCCUCugCUCgcacauCcUCAGGCUCg -3' miRNA: 3'- -CGGAGugGAGgaauuuGcAGUCCGGG- -5' |
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28462 | 3' | -52.9 | NC_005946.1 | + | 19173 | 0.68 | 0.901206 |
Target: 5'- cCCUCuccuggauauaGCCUCCcUGAGCGg-AGGCCa -3' miRNA: 3'- cGGAG-----------UGGAGGaAUUUGCagUCCGGg -5' |
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28462 | 3' | -52.9 | NC_005946.1 | + | 26537 | 0.67 | 0.925651 |
Target: 5'- uGCCgUCuGCCUCCUguucaugcccaugggGAugGUCGaggggucagagucGGCCCu -3' miRNA: 3'- -CGG-AG-UGGAGGAa--------------UUugCAGU-------------CCGGG- -5' |
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28462 | 3' | -52.9 | NC_005946.1 | + | 26966 | 0.68 | 0.872742 |
Target: 5'- uGUCUC-CCgucugCCU--GGCGUCGGGCUUg -3' miRNA: 3'- -CGGAGuGGa----GGAauUUGCAGUCCGGG- -5' |
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28462 | 3' | -52.9 | NC_005946.1 | + | 30138 | 0.68 | 0.879485 |
Target: 5'- cGUCUC-CCUUCUUGguGACGcugucuaUCAgGGCCCu -3' miRNA: 3'- -CGGAGuGGAGGAAU--UUGC-------AGU-CCGGG- -5' |
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28462 | 3' | -52.9 | NC_005946.1 | + | 32393 | 0.67 | 0.919926 |
Target: 5'- gGCCaagCACgUCCcc-GACGgCAGGUCCg -3' miRNA: 3'- -CGGa--GUGgAGGaauUUGCaGUCCGGG- -5' |
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28462 | 3' | -52.9 | NC_005946.1 | + | 34722 | 0.67 | 0.931117 |
Target: 5'- cGCuCUCACCaggcagCCcguGGCGggCAGGUCCa -3' miRNA: 3'- -CG-GAGUGGa-----GGaauUUGCa-GUCCGGG- -5' |
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28462 | 3' | -52.9 | NC_005946.1 | + | 36969 | 0.67 | 0.913942 |
Target: 5'- uCCUCAgCaUCCuUUGAGCGUCAaGGaCCg -3' miRNA: 3'- cGGAGUgG-AGG-AAUUUGCAGU-CCgGG- -5' |
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28462 | 3' | -52.9 | NC_005946.1 | + | 38181 | 0.72 | 0.673392 |
Target: 5'- gGCCaccacggUgACCUCgggCUgagGGACGUCGGGCCCc -3' miRNA: 3'- -CGG-------AgUGGAG---GAa--UUUGCAGUCCGGG- -5' |
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28462 | 3' | -52.9 | NC_005946.1 | + | 40838 | 0.69 | 0.857089 |
Target: 5'- cGCCUC-CgUCCUcGGACucgagCAGGUCCg -3' miRNA: 3'- -CGGAGuGgAGGAaUUUGca---GUCCGGG- -5' |
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28462 | 3' | -52.9 | NC_005946.1 | + | 41515 | 0.78 | 0.392753 |
Target: 5'- aGCCUgCACCUCUUU--GCGaUgGGGCCCg -3' miRNA: 3'- -CGGA-GUGGAGGAAuuUGC-AgUCCGGG- -5' |
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28462 | 3' | -52.9 | NC_005946.1 | + | 42074 | 0.66 | 0.941274 |
Target: 5'- gGCCU--UCUCCUU--ACcaCAGGCCCu -3' miRNA: 3'- -CGGAguGGAGGAAuuUGcaGUCCGGG- -5' |
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28462 | 3' | -52.9 | NC_005946.1 | + | 48885 | 0.72 | 0.716363 |
Target: 5'- uGCCUgACUUCCUcgGggUGUCuggaAGGUCCa -3' miRNA: 3'- -CGGAgUGGAGGAa-UuuGCAG----UCCGGG- -5' |
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28462 | 3' | -52.9 | NC_005946.1 | + | 57199 | 0.69 | 0.848101 |
Target: 5'- aUCUC-CCUCCUccaccugucccagUccACGUCAGGCuCCa -3' miRNA: 3'- cGGAGuGGAGGA-------------AuuUGCAGUCCG-GG- -5' |
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28462 | 3' | -52.9 | NC_005946.1 | + | 57242 | 0.66 | 0.954597 |
Target: 5'- ---aCAgCUCCUgc-GCG-CAGGCCCc -3' miRNA: 3'- cggaGUgGAGGAauuUGCaGUCCGGG- -5' |
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28462 | 3' | -52.9 | NC_005946.1 | + | 57496 | 0.68 | 0.880222 |
Target: 5'- uGCCUCcugGCCUCCgcauugccAGugGUgUAGGCCg -3' miRNA: 3'- -CGGAG---UGGAGGaa------UUugCA-GUCCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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