miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28463 5' -60.2 NC_005946.1 + 57590 0.66 0.623414
Target:  5'- gGUACUUGGCCuuguuggggagcAGGUUg-GCCCugaGGCCc -3'
miRNA:   3'- -CAUGAGCCGG------------UCCAAgaCGGG---CCGGu -5'
28463 5' -60.2 NC_005946.1 + 30825 0.66 0.623414
Target:  5'- ----aCGGCCAGGUcugUCUuuaccaggGCCCuGCCAa -3'
miRNA:   3'- caugaGCCGGUCCA---AGA--------CGGGcCGGU- -5'
28463 5' -60.2 NC_005946.1 + 18908 0.66 0.613139
Target:  5'- -----aGGaCGGGUUCggcGCCCGGCCu -3'
miRNA:   3'- caugagCCgGUCCAAGa--CGGGCCGGu -5'
28463 5' -60.2 NC_005946.1 + 71320 0.66 0.610059
Target:  5'- cGUGCUggauccccugaagaCGGCCAGGgccuucCUGUCCcuccaGGCCGg -3'
miRNA:   3'- -CAUGA--------------GCCGGUCCaa----GACGGG-----CCGGU- -5'
28463 5' -60.2 NC_005946.1 + 81490 0.66 0.582429
Target:  5'- cUGCUUGGCCAcGGUcUCUGC--GGCCu -3'
miRNA:   3'- cAUGAGCCGGU-CCA-AGACGggCCGGu -5'
28463 5' -60.2 NC_005946.1 + 84806 0.67 0.552043
Target:  5'- ---aUCGGCgAGGUUCU-CCCcGCCAc -3'
miRNA:   3'- caugAGCCGgUCCAAGAcGGGcCGGU- -5'
28463 5' -60.2 NC_005946.1 + 58477 0.67 0.552043
Target:  5'- --cUUCGGCguGaGcggUCUGCgCCGGCCAc -3'
miRNA:   3'- cauGAGCCGguC-Ca--AGACG-GGCCGGU- -5'
28463 5' -60.2 NC_005946.1 + 3272 0.67 0.552043
Target:  5'- -aGCUCGGCagacaCGGGcUUCUGCaccaUGGCCu -3'
miRNA:   3'- caUGAGCCG-----GUCC-AAGACGg---GCCGGu -5'
28463 5' -60.2 NC_005946.1 + 103236 0.68 0.512326
Target:  5'- cGUACUCGGCCGGcccCUGCUacGCCGg -3'
miRNA:   3'- -CAUGAGCCGGUCcaaGACGGgcCGGU- -5'
28463 5' -60.2 NC_005946.1 + 13369 0.69 0.445947
Target:  5'- cGUGUUCGGCgGGGaggaUCUGCCCcuguuccauGGCCAc -3'
miRNA:   3'- -CAUGAGCCGgUCCa---AGACGGG---------CCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.