miRNA display CGI

Results 1 - 8 of 8 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
28464	3'	-55.2	NC_005946.1	+	10851	0.66	0.876404
	Target:  5'- -cCACCAuCCUGA---GGGcCAUGCCc -3' miRNA:   3'- gaGUGGUcGGACUcuaCCCaGUACGG- -5'
28464	3'	-55.2	NC_005946.1	+	85308	0.66	0.868853
	Target:  5'- uCUCAagAGCCUGAccGAgcagacUGuGGUCGUGUCg -3' miRNA:   3'- -GAGUggUCGGACU--CU------AC-CCAGUACGG- -5'
28464	3'	-55.2	NC_005946.1	+	21009	0.66	0.860286
	Target:  5'- cCUCGCaauCAGaCCUgcGAGGUGGGUCAaggacaggguguuUGCg -3' miRNA:   3'- -GAGUG---GUC-GGA--CUCUACCCAGU-------------ACGg -5'
28464	3'	-55.2	NC_005946.1	+	59598	0.66	0.853077
	Target:  5'- --gACUucuCCUGAGggGGGUCcacAUGCCg -3' miRNA:   3'- gagUGGuc-GGACUCuaCCCAG---UACGG- -5'
28464	3'	-55.2	NC_005946.1	+	59487	0.66	0.844863
	Target:  5'- -aUAUCAGCgUGAGGUGGuGUCAcgGUa -3' miRNA:   3'- gaGUGGUCGgACUCUACC-CAGUa-CGg -5'
28464	3'	-55.2	NC_005946.1	+	36039	0.67	0.836444
	Target:  5'- aUCACCAGCUUGuAGAggacGGcCAUGUa -3' miRNA:   3'- gAGUGGUCGGAC-UCUac--CCaGUACGg -5'
28464	3'	-55.2	NC_005946.1	+	48642	0.67	0.810026
	Target:  5'- aUCGCUAGCCUGAuuacgGGGa-GUGCUa -3' miRNA:   3'- gAGUGGUCGGACUcua--CCCagUACGG- -5'
28464	3'	-55.2	NC_005946.1	+	71047	0.71	0.617658
	Target:  5'- cCUgGCCAGCCUGAaGgcGGGagCGUGaCCc -3' miRNA:   3'- -GAgUGGUCGGACU-CuaCCCa-GUAC-GG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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