miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28465 3' -58.5 NC_005946.1 + 78077 0.66 0.743586
Target:  5'- -gGGCCCUCCUCGacagcuuguccucgGGCcuccCGUCCc- -3'
miRNA:   3'- ugCCGGGAGGAGUa-------------CCGuu--GCAGGcu -5'
28465 3' -58.5 NC_005946.1 + 88521 0.66 0.719865
Target:  5'- uACGGCCCUUUaCA-GGaCAAUGUuuGAg -3'
miRNA:   3'- -UGCCGGGAGGaGUaCC-GUUGCAggCU- -5'
28465 3' -58.5 NC_005946.1 + 41972 0.66 0.699755
Target:  5'- gAUGGCCCUcagCCUCu--GCAcuGCGUCCa- -3'
miRNA:   3'- -UGCCGGGA---GGAGuacCGU--UGCAGGcu -5'
28465 3' -58.5 NC_005946.1 + 21823 0.67 0.68961
Target:  5'- -aGGCCUacucggUCCUCAUGGCGuCuUCUGGa -3'
miRNA:   3'- ugCCGGG------AGGAGUACCGUuGcAGGCU- -5'
28465 3' -58.5 NC_005946.1 + 8427 0.67 0.658918
Target:  5'- -gGGUagugCUCCUugacaaaguaCGUGGUGGCGUCCGAa -3'
miRNA:   3'- ugCCGg---GAGGA----------GUACCGUUGCAGGCU- -5'
28465 3' -58.5 NC_005946.1 + 86125 0.68 0.601274
Target:  5'- -aGGCCgUCCuccugucccuggugaUCAUGGCAGCccCCGAc -3'
miRNA:   3'- ugCCGGgAGG---------------AGUACCGUUGcaGGCU- -5'
28465 3' -58.5 NC_005946.1 + 33148 0.68 0.586923
Target:  5'- -gGGCgCUCCcgcCAggcUGGCGugGUCCGGc -3'
miRNA:   3'- ugCCGgGAGGa--GU---ACCGUugCAGGCU- -5'
28465 3' -58.5 NC_005946.1 + 6179 0.69 0.516502
Target:  5'- cAC-GCCCUCUcCAUGGCcacucuGGCGUCUGAa -3'
miRNA:   3'- -UGcCGGGAGGaGUACCG------UUGCAGGCU- -5'
28465 3' -58.5 NC_005946.1 + 3741 0.72 0.387969
Target:  5'- -gGGaCCUCCUCAUGaGCucguaguCGUCCGAg -3'
miRNA:   3'- ugCCgGGAGGAGUAC-CGuu-----GCAGGCU- -5'
28465 3' -58.5 NC_005946.1 + 78962 0.72 0.355276
Target:  5'- gGCGGgCUUCCUCugccUGGCcACGUCCa- -3'
miRNA:   3'- -UGCCgGGAGGAGu---ACCGuUGCAGGcu -5'
28465 3' -58.5 NC_005946.1 + 67224 0.73 0.33206
Target:  5'- uCGGCCUUCCUCAUGGUAGaguaUCCu- -3'
miRNA:   3'- uGCCGGGAGGAGUACCGUUgc--AGGcu -5'
28465 3' -58.5 NC_005946.1 + 32336 0.87 0.038699
Target:  5'- gGCGGCCCUCCUCAUGGagcagcacGCGUCCGc -3'
miRNA:   3'- -UGCCGGGAGGAGUACCgu------UGCAGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.