Results 21 - 26 of 26 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28466 | 3' | -55.8 | NC_005946.1 | + | 84696 | 0.68 | 0.764459 |
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Target: 5'- uGGCCAagguGGACGGCCUcaaGCa-GACCa- -3' miRNA: 3'- -CCGGUgu--UCUGCCGGA---UGcaCUGGcu -5' |
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| 28466 | 3' | -55.8 | NC_005946.1 | + | 84756 | 0.68 | 0.78347 |
|
Target: 5'- cGGCagagauAGACGGCCUgucugacaGCGUGAUCa- -3' miRNA: 3'- -CCGgugu--UCUGCCGGA--------UGCACUGGcu -5' |
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| 28466 | 3' | -55.8 | NC_005946.1 | + | 92282 | 0.66 | 0.853181 |
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Target: 5'- aGGUCAgGAgGAUGGCCgggcagaACcUGGCCGAg -3' miRNA: 3'- -CCGGUgUU-CUGCCGGa------UGcACUGGCU- -5' |
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| 28466 | 3' | -55.8 | NC_005946.1 | + | 93389 | 0.75 | 0.381077 |
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Target: 5'- uGCCAUccuGAUGGCCUGCGUucaggccagGGCCGAc -3' miRNA: 3'- cCGGUGuu-CUGCCGGAUGCA---------CUGGCU- -5' |
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| 28466 | 3' | -55.8 | NC_005946.1 | + | 97054 | 0.71 | 0.569307 |
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Target: 5'- gGGCCACGaaaacggAGGCGGCCUG-GUcACCGu -3' miRNA: 3'- -CCGGUGU-------UCUGCCGGAUgCAcUGGCu -5' |
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| 28466 | 3' | -55.8 | NC_005946.1 | + | 101865 | 0.67 | 0.792769 |
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Target: 5'- cGGCgUugGAGACGGCCagcaACGccACCGGg -3' miRNA: 3'- -CCG-GugUUCUGCCGGa---UGCacUGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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