Results 21 - 26 of 26 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28466 | 3' | -55.8 | NC_005946.1 | + | 32647 | 0.66 | 0.876123 |
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Target: 5'- uGGCCaACAAGAgGGUggACGccACCGGg -3' miRNA: 3'- -CCGG-UGUUCUgCCGgaUGCacUGGCU- -5' |
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| 28466 | 3' | -55.8 | NC_005946.1 | + | 26904 | 0.82 | 0.147175 |
|
Target: 5'- cGGCCACgGAGGCGGCgUACGccagGGCCGGg -3' miRNA: 3'- -CCGGUG-UUCUGCCGgAUGCa---CUGGCU- -5' |
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| 28466 | 3' | -55.8 | NC_005946.1 | + | 23176 | 0.7 | 0.674016 |
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Target: 5'- aGGCCGCGAGGaGGCagUACcUGGCCGc -3' miRNA: 3'- -CCGGUGUUCUgCCGg-AUGcACUGGCu -5' |
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| 28466 | 3' | -55.8 | NC_005946.1 | + | 17325 | 0.67 | 0.836841 |
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Target: 5'- cGGCCugGGGGCaguuguGGCCUACaaGAUCa- -3' miRNA: 3'- -CCGGugUUCUG------CCGGAUGcaCUGGcu -5' |
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| 28466 | 3' | -55.8 | NC_005946.1 | + | 8393 | 0.66 | 0.845111 |
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Target: 5'- aGCCA-GAGACGGCagCUugGUGaACCa- -3' miRNA: 3'- cCGGUgUUCUGCCG--GAugCAC-UGGcu -5' |
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| 28466 | 3' | -55.8 | NC_005946.1 | + | 8020 | 0.68 | 0.748897 |
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Target: 5'- uGGCCGgGAGGacccuggcuccguccUGGCCU--GUGGCCGGg -3' miRNA: 3'- -CCGGUgUUCU---------------GCCGGAugCACUGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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