miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28467 3' -53 NC_005946.1 + 42086 0.66 0.947932
Target:  5'- aCCacagGC-CCUCUUGAcGUAGggucuggggacCAGGAGCu -3'
miRNA:   3'- -GGa---CGcGGAGAACUaCGUU-----------GUCCUCG- -5'
28467 3' -53 NC_005946.1 + 70003 0.66 0.93844
Target:  5'- uCCUG-GCCgucCUgagGAUGCAAgacacCAGGcAGCa -3'
miRNA:   3'- -GGACgCGGa--GAa--CUACGUU-----GUCC-UCG- -5'
28467 3' -53 NC_005946.1 + 96781 0.66 0.932775
Target:  5'- cCCUG-GCgCUCaUGAUGacgcucuuugguuCAugAGGAGCa -3'
miRNA:   3'- -GGACgCG-GAGaACUAC-------------GUugUCCUCG- -5'
28467 3' -53 NC_005946.1 + 50972 0.67 0.916318
Target:  5'- gCCUGaggagGCUgag-GAUGCugAGCAGGAGCc -3'
miRNA:   3'- -GGACg----CGGagaaCUACG--UUGUCCUCG- -5'
28467 3' -53 NC_005946.1 + 23544 0.67 0.896301
Target:  5'- aCCacgGCGuCCUCggccgagagGAUGgacguguCAGCGGGAGCg -3'
miRNA:   3'- -GGa--CGC-GGAGaa-------CUAC-------GUUGUCCUCG- -5'
28467 3' -53 NC_005946.1 + 11143 0.67 0.89003
Target:  5'- aCCaGCGCCcCUUGG-GUGGCGGGucacAGCa -3'
miRNA:   3'- -GGaCGCGGaGAACUaCGUUGUCC----UCG- -5'
28467 3' -53 NC_005946.1 + 44890 0.68 0.851618
Target:  5'- gCCUGCGCCUCgaacccGAcGCcACAGaGGUa -3'
miRNA:   3'- -GGACGCGGAGaa----CUaCGuUGUCcUCG- -5'
28467 3' -53 NC_005946.1 + 80950 0.69 0.825896
Target:  5'- --gGcCGCCUCcc-GUGCuAGCGGGAGCg -3'
miRNA:   3'- ggaC-GCGGAGaacUACG-UUGUCCUCG- -5'
28467 3' -53 NC_005946.1 + 41516 0.7 0.798434
Target:  5'- gCCUGCaCCUCUU--UGCGAUGGG-GCc -3'
miRNA:   3'- -GGACGcGGAGAAcuACGUUGUCCuCG- -5'
28467 3' -53 NC_005946.1 + 66540 0.7 0.749497
Target:  5'- cCCUGCGUCUUcUGAUcUGGCGGGGGa -3'
miRNA:   3'- -GGACGCGGAGaACUAcGUUGUCCUCg -5'
28467 3' -53 NC_005946.1 + 37695 0.72 0.644441
Target:  5'- aCUUGUagucCCUCUUGAUG-AugGGGAGCa -3'
miRNA:   3'- -GGACGc---GGAGAACUACgUugUCCUCG- -5'
28467 3' -53 NC_005946.1 + 9377 0.73 0.621911
Target:  5'- uCUUGCuCaUCUUGAUGCGagagccuGCAGGAGCc -3'
miRNA:   3'- -GGACGcGgAGAACUACGU-------UGUCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.