miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28470 5' -55.5 NC_005946.1 + 74555 0.66 0.882251
Target:  5'- --cGCuCAGaGUCUgGCUGGGAGUagACGCa -3'
miRNA:   3'- cccCG-GUC-CAGGaUGACCUUCA--UGCG- -5'
28470 5' -55.5 NC_005946.1 + 26454 0.66 0.872002
Target:  5'- uGGGCCGGGuggacgcUCCUggGCUGGAccacgaccgcccugGCGCu -3'
miRNA:   3'- cCCCGGUCC-------AGGA--UGACCUuca-----------UGCG- -5'
28470 5' -55.5 NC_005946.1 + 30771 0.66 0.859751
Target:  5'- aGGGCCAGG-CCggacCUGGGAGccacccUGCc -3'
miRNA:   3'- cCCCGGUCCaGGau--GACCUUCau----GCG- -5'
28470 5' -55.5 NC_005946.1 + 26575 0.66 0.859751
Target:  5'- aGGGGUCAGaGUCggccCUGGAuaaagACGCg -3'
miRNA:   3'- -CCCCGGUC-CAGgau-GACCUuca--UGCG- -5'
28470 5' -55.5 NC_005946.1 + 49447 0.67 0.826783
Target:  5'- cGGGGCguGGaCCU-CUGGAgucgauggGGUGCu- -3'
miRNA:   3'- -CCCCGguCCaGGAuGACCU--------UCAUGcg -5'
28470 5' -55.5 NC_005946.1 + 56484 0.67 0.826783
Target:  5'- aGGGGaCgGGGUCCUcguagACgGGAGGacCGCc -3'
miRNA:   3'- -CCCC-GgUCCAGGA-----UGaCCUUCauGCG- -5'
28470 5' -55.5 NC_005946.1 + 48121 0.67 0.80826
Target:  5'- aGGGGCUuuGGGUacguguacguccCCUACUGGGucaugaagcccauGGcUGCGUa -3'
miRNA:   3'- -CCCCGG--UCCA------------GGAUGACCU-------------UC-AUGCG- -5'
28470 5' -55.5 NC_005946.1 + 71412 0.67 0.800092
Target:  5'- cGGGUaGGGUCCUGCccgaGGAcguGUAgGCg -3'
miRNA:   3'- cCCCGgUCCAGGAUGa---CCUu--CAUgCG- -5'
28470 5' -55.5 NC_005946.1 + 57801 0.68 0.790866
Target:  5'- gGGGGCCAgGGUCCUGa--GAAGUuuccugucUGCu -3'
miRNA:   3'- -CCCCGGU-CCAGGAUgacCUUCAu-------GCG- -5'
28470 5' -55.5 NC_005946.1 + 93096 0.68 0.781491
Target:  5'- uGGGCCgAGGUgaCggcugGCaGGAGGUACGUc -3'
miRNA:   3'- cCCCGG-UCCAg-Ga----UGaCCUUCAUGCG- -5'
28470 5' -55.5 NC_005946.1 + 15423 0.68 0.752564
Target:  5'- -cGGCCAGGUCC-ACUGug---ACGCa -3'
miRNA:   3'- ccCCGGUCCAGGaUGACcuucaUGCG- -5'
28470 5' -55.5 NC_005946.1 + 83992 0.69 0.741693
Target:  5'- uGGGCCGucaccggacuGGUCCUcaacgucGCUGuGAGGUuCGCc -3'
miRNA:   3'- cCCCGGU----------CCAGGA-------UGAC-CUUCAuGCG- -5'
28470 5' -55.5 NC_005946.1 + 33946 0.69 0.736712
Target:  5'- uGGGGCCugaggaacagagaguGGGacuacgaCCUGCUGGGAG-ACGa -3'
miRNA:   3'- -CCCCGG---------------UCCa------GGAUGACCUUCaUGCg -5'
28470 5' -55.5 NC_005946.1 + 45984 0.69 0.732709
Target:  5'- -aGGCCGGGaaagaUCCUAaagGGAGGUGCa- -3'
miRNA:   3'- ccCCGGUCC-----AGGAUga-CCUUCAUGcg -5'
28470 5' -55.5 NC_005946.1 + 33165 0.69 0.72264
Target:  5'- -uGGCguGGUCCggcGCUGcGggGUcCGCg -3'
miRNA:   3'- ccCCGguCCAGGa--UGAC-CuuCAuGCG- -5'
28470 5' -55.5 NC_005946.1 + 102389 0.69 0.718589
Target:  5'- -aGGCaCAGGUCCaagcacgaggaccACaGGAGGUACGCc -3'
miRNA:   3'- ccCCG-GUCCAGGa------------UGaCCUUCAUGCG- -5'
28470 5' -55.5 NC_005946.1 + 42142 0.69 0.691986
Target:  5'- -cGGCCAGGagccacgacccUCCUcccCUGGAGGcgACGCu -3'
miRNA:   3'- ccCCGGUCC-----------AGGAu--GACCUUCa-UGCG- -5'
28470 5' -55.5 NC_005946.1 + 89524 0.79 0.218556
Target:  5'- aGGGGCCAGGUCUU--UGGAGuggcGUGCGUc -3'
miRNA:   3'- -CCCCGGUCCAGGAugACCUU----CAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.