miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28473 3' -52.5 NC_005946.1 + 28030 0.66 0.958852
Target:  5'- -uAACCUCAgGGaCGACGUcacGGACUg -3'
miRNA:   3'- gcUUGGAGUgUC-GCUGCAacuCCUGG- -5'
28473 3' -52.5 NC_005946.1 + 40575 0.66 0.958852
Target:  5'- -uGACCaaGCAGagucgGGCGUcGAGGGCCa -3'
miRNA:   3'- gcUUGGagUGUCg----CUGCAaCUCCUGG- -5'
28473 3' -52.5 NC_005946.1 + 56224 0.66 0.954949
Target:  5'- -cAGCCUCcUGGCGgucuuuACGUcGGGGACCu -3'
miRNA:   3'- gcUUGGAGuGUCGC------UGCAaCUCCUGG- -5'
28473 3' -52.5 NC_005946.1 + 10775 0.67 0.950802
Target:  5'- cCGGACgUCAU-GCaGGCGguccUGAGGAUCg -3'
miRNA:   3'- -GCUUGgAGUGuCG-CUGCa---ACUCCUGG- -5'
28473 3' -52.5 NC_005946.1 + 102779 0.67 0.950802
Target:  5'- cCGGACC--ACGGCGAgagggcacuccUGUgggugucgcugUGAGGACCa -3'
miRNA:   3'- -GCUUGGagUGUCGCU-----------GCA-----------ACUCCUGG- -5'
28473 3' -52.5 NC_005946.1 + 97908 0.67 0.950802
Target:  5'- -cAGCCUCACgAGCGGCcucu-GGGCCc -3'
miRNA:   3'- gcUUGGAGUG-UCGCUGcaacuCCUGG- -5'
28473 3' -52.5 NC_005946.1 + 49757 0.67 0.945956
Target:  5'- gGGGCCUCggggauggcgacuGCGGCuGugGccgaagugGAGGGCCa -3'
miRNA:   3'- gCUUGGAG-------------UGUCG-CugCaa------CUCCUGG- -5'
28473 3' -52.5 NC_005946.1 + 42072 0.67 0.936362
Target:  5'- uGGGCCUucuccuuacCACAGgcccucuUGACGUagggucUGGGGACCa -3'
miRNA:   3'- gCUUGGA---------GUGUC-------GCUGCA------ACUCCUGG- -5'
28473 3' -52.5 NC_005946.1 + 19532 0.68 0.928498
Target:  5'- uGAACCUCcuguaGCcccuGGgGACGUUGAccaggcauggcuuagGGGCCg -3'
miRNA:   3'- gCUUGGAG-----UG----UCgCUGCAACU---------------CCUGG- -5'
28473 3' -52.5 NC_005946.1 + 34268 0.68 0.90854
Target:  5'- aGAAgCUCGucaaGGUGAgGcUGAGGACCc -3'
miRNA:   3'- gCUUgGAGUg---UCGCUgCaACUCCUGG- -5'
28473 3' -52.5 NC_005946.1 + 6881 0.68 0.90854
Target:  5'- gGAGCCUCGCGGUGaAUGUcu-GGAUg -3'
miRNA:   3'- gCUUGGAGUGUCGC-UGCAacuCCUGg -5'
28473 3' -52.5 NC_005946.1 + 2046 0.68 0.895432
Target:  5'- aGGACCUCcgccaucucacGCAgGCGAcCGUcGAGGGCg -3'
miRNA:   3'- gCUUGGAG-----------UGU-CGCU-GCAaCUCCUGg -5'
28473 3' -52.5 NC_005946.1 + 24067 0.69 0.873933
Target:  5'- gGAACCUgucuugccCGCGGCGACccucaGGGGACUc -3'
miRNA:   3'- gCUUGGA--------GUGUCGCUGcaa--CUCCUGG- -5'
28473 3' -52.5 NC_005946.1 + 73905 0.69 0.866296
Target:  5'- aGaAACCUUACuuguucAGagaGACGUgccUGAGGACCa -3'
miRNA:   3'- gC-UUGGAGUG------UCg--CUGCA---ACUCCUGG- -5'
28473 3' -52.5 NC_005946.1 + 91320 0.7 0.850349
Target:  5'- aGAGCCUgGCGuCgGACGUUgccaugagGAGGGCCg -3'
miRNA:   3'- gCUUGGAgUGUcG-CUGCAA--------CUCCUGG- -5'
28473 3' -52.5 NC_005946.1 + 3869 0.7 0.84037
Target:  5'- aCGAGCCUCuCGGaGACGgcugccagcucGGGGGCCu -3'
miRNA:   3'- -GCUUGGAGuGUCgCUGCaa---------CUCCUGG- -5'
28473 3' -52.5 NC_005946.1 + 30067 0.7 0.824858
Target:  5'- aGAuauuCC-CAUGGCGuCGgcGAGGACCa -3'
miRNA:   3'- gCUu---GGaGUGUCGCuGCaaCUCCUGG- -5'
28473 3' -52.5 NC_005946.1 + 61356 0.7 0.815076
Target:  5'- -aGACCUCACGGCccuggcggugugaGGCGUcuUGAGGggaGCCu -3'
miRNA:   3'- gcUUGGAGUGUCG-------------CUGCA--ACUCC---UGG- -5'
28473 3' -52.5 NC_005946.1 + 103805 0.71 0.794876
Target:  5'- aCGuGCCcugCGCGGCuGACGUcggagagcuaaagaUGGGGACCc -3'
miRNA:   3'- -GCuUGGa--GUGUCG-CUGCA--------------ACUCCUGG- -5'
28473 3' -52.5 NC_005946.1 + 70531 0.71 0.769055
Target:  5'- uGGACagCACuGCgguacuccucuuGACGUUGAGGACCu -3'
miRNA:   3'- gCUUGgaGUGuCG------------CUGCAACUCCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.