Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 28475 | 5' | -52 | NC_005946.1 | + | 61099 | 0.66 | 0.969477 |
|
Target: 5'- cCGAGCAGGAGGGcG-CUgUUGGCGuuGGGg -3' miRNA: 3'- -GUUUGUCCUCUCaCaGA-GGCCGU--UCC- -5' |
|||||||
| 28475 | 5' | -52 | NC_005946.1 | + | 23378 | 0.66 | 0.955152 |
|
Target: 5'- gAGGCuGGAG-GUGUCUgCGG-GAGGc -3' miRNA: 3'- gUUUGuCCUCuCACAGAgGCCgUUCC- -5' |
|||||||
| 28475 | 5' | -52 | NC_005946.1 | + | 62962 | 0.68 | 0.901537 |
|
Target: 5'- aCAGACAGGGGuGUG---CCGGCGuccuGGa -3' miRNA: 3'- -GUUUGUCCUCuCACagaGGCCGUu---CC- -5' |
|||||||
| 28475 | 5' | -52 | NC_005946.1 | + | 51884 | 0.69 | 0.894742 |
|
Target: 5'- uCGAGCAuGGAGAGUGUU--UGGCcuGGa -3' miRNA: 3'- -GUUUGU-CCUCUCACAGagGCCGuuCC- -5' |
|||||||
| 28475 | 5' | -52 | NC_005946.1 | + | 29412 | 0.69 | 0.880398 |
|
Target: 5'- aGGACAGGAGGGguUGaUCUCaagGGuCAGGGa -3' miRNA: 3'- gUUUGUCCUCUC--AC-AGAGg--CC-GUUCC- -5' |
|||||||
| 28475 | 5' | -52 | NC_005946.1 | + | 92431 | 0.7 | 0.831729 |
|
Target: 5'- gCAAACGGGuGGAGgagaGcCaCCGGCAGGGa -3' miRNA: 3'- -GUUUGUCC-UCUCa---CaGaGGCCGUUCC- -5' |
|||||||
| 28475 | 5' | -52 | NC_005946.1 | + | 43958 | 0.7 | 0.822871 |
|
Target: 5'- aCAAACAGGAGGGUG---CUGGCGAc- -3' miRNA: 3'- -GUUUGUCCUCUCACagaGGCCGUUcc -5' |
|||||||
| 28475 | 5' | -52 | NC_005946.1 | + | 65760 | 0.75 | 0.576251 |
|
Target: 5'- gGGGCuGGAGAGgcUCUCCGGCGGGc -3' miRNA: 3'- gUUUGuCCUCUCacAGAGGCCGUUCc -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home