miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28476 3' -59.1 NC_005946.1 + 94949 0.65 0.707042
Target:  5'- cGUCCCugCcccugAGGAGCCUgUAGGAcucuacaCCGGg -3'
miRNA:   3'- -UAGGGugG-----UCCUUGGG-AUCCU-------GGCCg -5'
28476 3' -59.1 NC_005946.1 + 64171 0.66 0.697944
Target:  5'- -aUCCGUCGGGAcCCCUGGGGCCc-- -3'
miRNA:   3'- uaGGGUGGUCCUuGGGAUCCUGGccg -5'
28476 3' -59.1 NC_005946.1 + 95673 0.66 0.697944
Target:  5'- gGUCaCCGCCGGGGACCUga-GACCu-- -3'
miRNA:   3'- -UAG-GGUGGUCCUUGGGaucCUGGccg -5'
28476 3' -59.1 NC_005946.1 + 85036 0.66 0.697944
Target:  5'- --gCCGCCGcGGuGGCCCUgAGGGCaaaGGCu -3'
miRNA:   3'- uagGGUGGU-CC-UUGGGA-UCCUGg--CCG- -5'
28476 3' -59.1 NC_005946.1 + 84408 0.66 0.687782
Target:  5'- uGUCCaggucaGCCAGGGACCU--GGACucugCGGUa -3'
miRNA:   3'- -UAGGg-----UGGUCCUUGGGauCCUG----GCCG- -5'
28476 3' -59.1 NC_005946.1 + 34294 0.66 0.677572
Target:  5'- -aCCC-CCAGGcACCC-AGaGAUgGGCg -3'
miRNA:   3'- uaGGGuGGUCCuUGGGaUC-CUGgCCG- -5'
28476 3' -59.1 NC_005946.1 + 44623 0.66 0.65705
Target:  5'- cUCCaagGCgGGGAcgggguucgacGCCUgcgagAGGACCGGCc -3'
miRNA:   3'- uAGGg--UGgUCCU-----------UGGGa----UCCUGGCCG- -5'
28476 3' -59.1 NC_005946.1 + 63596 0.67 0.646754
Target:  5'- -gCCUACCugaccccuGGGGCCCUuuggacccucAGGACCcGCg -3'
miRNA:   3'- uaGGGUGGu-------CCUUGGGA----------UCCUGGcCG- -5'
28476 3' -59.1 NC_005946.1 + 58250 0.67 0.636447
Target:  5'- cAUCuCCACCAGGggUcuaCCUcucAGGuCCaGGCu -3'
miRNA:   3'- -UAG-GGUGGUCCuuG---GGA---UCCuGG-CCG- -5'
28476 3' -59.1 NC_005946.1 + 95262 0.67 0.636447
Target:  5'- -cCCCACCAGGu-CCCUcaccucauccccGGGAgUGGa -3'
miRNA:   3'- uaGGGUGGUCCuuGGGA------------UCCUgGCCg -5'
28476 3' -59.1 NC_005946.1 + 62231 0.67 0.636447
Target:  5'- gGUCCCGuagAGGGACCCcAGGuCCGaGCc -3'
miRNA:   3'- -UAGGGUgg-UCCUUGGGaUCCuGGC-CG- -5'
28476 3' -59.1 NC_005946.1 + 94629 0.67 0.625105
Target:  5'- cUCCCGUCAGGAugUCUAgGGACUccucgaaGGCc -3'
miRNA:   3'- uAGGGUGGUCCUugGGAU-CCUGG-------CCG- -5'
28476 3' -59.1 NC_005946.1 + 102363 0.67 0.615829
Target:  5'- uUCCCAagAGGGGCCUggccauGGACaGGCa -3'
miRNA:   3'- uAGGGUggUCCUUGGGau----CCUGgCCG- -5'
28476 3' -59.1 NC_005946.1 + 80290 0.67 0.615829
Target:  5'- cUCCuCACCAGGAGgcuguCCCU-GGACaaGCa -3'
miRNA:   3'- uAGG-GUGGUCCUU-----GGGAuCCUGgcCG- -5'
28476 3' -59.1 NC_005946.1 + 26816 0.67 0.595261
Target:  5'- -aCCC-CCAGGAacacuccgACCCUGGcGGCCucGGUc -3'
miRNA:   3'- uaGGGuGGUCCU--------UGGGAUC-CUGG--CCG- -5'
28476 3' -59.1 NC_005946.1 + 56467 0.68 0.585015
Target:  5'- -cCCCuCCAGG-GCCCUggagGGGACgGGg -3'
miRNA:   3'- uaGGGuGGUCCuUGGGA----UCCUGgCCg -5'
28476 3' -59.1 NC_005946.1 + 36896 0.68 0.585015
Target:  5'- cUCCaggaagGCCAGGAGCCUgcAGGcgcACCGGUc -3'
miRNA:   3'- uAGGg-----UGGUCCUUGGGa-UCC---UGGCCG- -5'
28476 3' -59.1 NC_005946.1 + 33153 0.68 0.55451
Target:  5'- cUCCCGCCAGGcuGGCgU--GGuCCGGCg -3'
miRNA:   3'- uAGGGUGGUCC--UUGgGauCCuGGCCG- -5'
28476 3' -59.1 NC_005946.1 + 29233 0.68 0.548462
Target:  5'- -aCCCccggggaugacggcaACCAGGGGCCCaGGGGCCcaGGg -3'
miRNA:   3'- uaGGG---------------UGGUCCUUGGGaUCCUGG--CCg -5'
28476 3' -59.1 NC_005946.1 + 71327 0.68 0.544441
Target:  5'- gAUCCCcugaagacgGCCAGGGccuuccuguCCCUccAGG-CCGGCa -3'
miRNA:   3'- -UAGGG---------UGGUCCUu--------GGGA--UCCuGGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.