miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28477 5' -55.7 NC_005946.1 + 79236 0.66 0.870029
Target:  5'- gGUUCGUcgggcuUGCUGGcCCCguacaccaGCCAgGGGACCg -3'
miRNA:   3'- -CAAGCG------ACGGCUaGGG--------UGGU-CCUUGG- -5'
28477 5' -55.7 NC_005946.1 + 23680 0.66 0.854469
Target:  5'- --cCGUgucgGCCGuaCCCACCGGGu-CCg -3'
miRNA:   3'- caaGCGa---CGGCuaGGGUGGUCCuuGG- -5'
28477 5' -55.7 NC_005946.1 + 92253 0.66 0.846368
Target:  5'- -aUCgGCUGCgGAg---GCCAGGAACCc -3'
miRNA:   3'- caAG-CGACGgCUagggUGGUCCUUGG- -5'
28477 5' -55.7 NC_005946.1 + 10793 0.66 0.846368
Target:  5'- -gUC-CUGaggauCGcUCCCACCAGGGACa -3'
miRNA:   3'- caAGcGACg----GCuAGGGUGGUCCUUGg -5'
28477 5' -55.7 NC_005946.1 + 7555 0.67 0.812004
Target:  5'- --gUGUUGCCGAcUCCCACgaCGGGAGu- -3'
miRNA:   3'- caaGCGACGGCU-AGGGUG--GUCCUUgg -5'
28477 5' -55.7 NC_005946.1 + 103612 0.68 0.774902
Target:  5'- -cUCGgacGCgGAcCCCGCCGGGGGCUg -3'
miRNA:   3'- caAGCga-CGgCUaGGGUGGUCCUUGG- -5'
28477 5' -55.7 NC_005946.1 + 42818 0.68 0.755509
Target:  5'- -gUCGCUccugGCCcucaaGAUCCUGCCGGcGACCa -3'
miRNA:   3'- caAGCGA----CGG-----CUAGGGUGGUCcUUGG- -5'
28477 5' -55.7 NC_005946.1 + 84112 0.68 0.73566
Target:  5'- -cUCGCgcugGCCGAUCgCCugUcGGAcaGCCc -3'
miRNA:   3'- caAGCGa---CGGCUAG-GGugGuCCU--UGG- -5'
28477 5' -55.7 NC_005946.1 + 83153 0.68 0.73566
Target:  5'- -cUCGCacacuccucCCGGUCCgACCuGGGACCu -3'
miRNA:   3'- caAGCGac-------GGCUAGGgUGGuCCUUGG- -5'
28477 5' -55.7 NC_005946.1 + 87699 0.69 0.674159
Target:  5'- --aUGCaGUCGucuaugaCCACCAGGAGCCa -3'
miRNA:   3'- caaGCGaCGGCuag----GGUGGUCCUUGG- -5'
28477 5' -55.7 NC_005946.1 + 98139 0.7 0.653268
Target:  5'- -gUCGacccccGCCGAUCCCAuCCuGGggUCg -3'
miRNA:   3'- caAGCga----CGGCUAGGGU-GGuCCuuGG- -5'
28477 5' -55.7 NC_005946.1 + 55850 0.7 0.642791
Target:  5'- -cUgGUUGCUGGUCaCACCGGGAcaguaGCCg -3'
miRNA:   3'- caAgCGACGGCUAGgGUGGUCCU-----UGG- -5'
28477 5' -55.7 NC_005946.1 + 92866 0.71 0.590444
Target:  5'- cUUCuGCaGCCGAcuguUCCCugcucagguCCAGGAACCu -3'
miRNA:   3'- cAAG-CGaCGGCU----AGGGu--------GGUCCUUGG- -5'
28477 5' -55.7 NC_005946.1 + 90002 0.71 0.569674
Target:  5'- ---gGCcGCCGAUCCCACCcucguAGaGAACUa -3'
miRNA:   3'- caagCGaCGGCUAGGGUGG-----UC-CUUGG- -5'
28477 5' -55.7 NC_005946.1 + 41202 0.71 0.559354
Target:  5'- -gUC-CgGCCGGUCCCACCAGuccAGCCc -3'
miRNA:   3'- caAGcGaCGGCUAGGGUGGUCc--UUGG- -5'
28477 5' -55.7 NC_005946.1 + 95669 0.72 0.508675
Target:  5'- ------cGCUGGUCaCCGCCGGGGACCu -3'
miRNA:   3'- caagcgaCGGCUAG-GGUGGUCCUUGG- -5'
28477 5' -55.7 NC_005946.1 + 23033 0.73 0.488939
Target:  5'- -cUCGCUGUCcagGGUCCC-CguGGGACCu -3'
miRNA:   3'- caAGCGACGG---CUAGGGuGguCCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.