miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28478 3' -52.8 NC_005946.1 + 98127 0.66 0.95163
Target:  5'- uGCGUCAUCGucgucGACCCCCGc------ -3'
miRNA:   3'- cCGCAGUAGUu----CUGGGGGUuugucga -5'
28478 3' -52.8 NC_005946.1 + 75924 0.66 0.947226
Target:  5'- gGGCGUCAUCuccuGGucGCCCuCCAu--GGCa -3'
miRNA:   3'- -CCGCAGUAGu---UC--UGGG-GGUuugUCGa -5'
28478 3' -52.8 NC_005946.1 + 40590 0.66 0.947226
Target:  5'- gGGCGUCG--AGGGCCaCCUcucuGCAGCc -3'
miRNA:   3'- -CCGCAGUagUUCUGG-GGGuu--UGUCGa -5'
28478 3' -52.8 NC_005946.1 + 29217 0.66 0.937645
Target:  5'- uGGUggGUCcagCAuGACCCCCGgggauGACGGCa -3'
miRNA:   3'- -CCG--CAGua-GUuCUGGGGGU-----UUGUCGa -5'
28478 3' -52.8 NC_005946.1 + 82858 0.66 0.932463
Target:  5'- cGGagGUCcgCGAGA-CCCCAGAgGGCc -3'
miRNA:   3'- -CCg-CAGuaGUUCUgGGGGUUUgUCGa -5'
28478 3' -52.8 NC_005946.1 + 19056 0.66 0.932463
Target:  5'- aGCGUCGUUGucgucGACCCUCuugccguACAGCa -3'
miRNA:   3'- cCGCAGUAGUu----CUGGGGGuu-----UGUCGa -5'
28478 3' -52.8 NC_005946.1 + 32608 0.66 0.932463
Target:  5'- cGGCGUCGgguauaGGGACCUgcaCAGACAGg- -3'
miRNA:   3'- -CCGCAGUag----UUCUGGGg--GUUUGUCga -5'
28478 3' -52.8 NC_005946.1 + 34271 0.67 0.915341
Target:  5'- aGC-UCGUCAaggugaggcugaGGACCCCCAGGCAc-- -3'
miRNA:   3'- cCGcAGUAGU------------UCUGGGGGUUUGUcga -5'
28478 3' -52.8 NC_005946.1 + 20780 0.67 0.908471
Target:  5'- uGGCGUUGUC-AGGCCguguggaUCCAGACAGa- -3'
miRNA:   3'- -CCGCAGUAGuUCUGG-------GGGUUUGUCga -5'
28478 3' -52.8 NC_005946.1 + 1525 0.68 0.866388
Target:  5'- cGGCGUCcgCGGcGGCCCUCAG--GGCc -3'
miRNA:   3'- -CCGCAGuaGUU-CUGGGGGUUugUCGa -5'
28478 3' -52.8 NC_005946.1 + 64430 0.68 0.866388
Target:  5'- cGCGUCAcccUUggGACCCUgGAGC-GCa -3'
miRNA:   3'- cCGCAGU---AGuuCUGGGGgUUUGuCGa -5'
28478 3' -52.8 NC_005946.1 + 103690 0.7 0.777596
Target:  5'- gGGCuccuucugUAUCAAGaACCCCgGAGCGGCa -3'
miRNA:   3'- -CCGca------GUAGUUC-UGGGGgUUUGUCGa -5'
28478 3' -52.8 NC_005946.1 + 3732 0.7 0.777596
Target:  5'- aGGCGUCca-GGGACCUCCucAugAGCUc -3'
miRNA:   3'- -CCGCAGuagUUCUGGGGGu-UugUCGA- -5'
28478 3' -52.8 NC_005946.1 + 89467 0.71 0.71684
Target:  5'- uGCGaCAUCAAGGCCgCCgGAGCAGa- -3'
miRNA:   3'- cCGCaGUAGUUCUGG-GGgUUUGUCga -5'
28478 3' -52.8 NC_005946.1 + 5028 0.71 0.71684
Target:  5'- cGGCuGcCAUCGAGACggucgauagaCUCCGGACAGCg -3'
miRNA:   3'- -CCG-CaGUAGUUCUG----------GGGGUUUGUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.