miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28478 5' -62 NC_005946.1 + 37626 0.66 0.59081
Target:  5'- -cGGCGGUgaCGGGGUCCUUGuuGCugCc -3'
miRNA:   3'- ccUCGCCG--GUCCCAGGGACccUGugG- -5'
28478 5' -62 NC_005946.1 + 105351 0.66 0.59081
Target:  5'- cGGAG-GGUuguuccacuccaCGGGGgCUUUGGGACACUc -3'
miRNA:   3'- -CCUCgCCG------------GUCCCaGGGACCCUGUGG- -5'
28478 5' -62 NC_005946.1 + 22190 0.66 0.59081
Target:  5'- gGGGGCGauCCAGGaGUCCaccucuggacgCUGGGAaggugucugaCACCg -3'
miRNA:   3'- -CCUCGCc-GGUCC-CAGG-----------GACCCU----------GUGG- -5'
28478 5' -62 NC_005946.1 + 97813 0.66 0.571015
Target:  5'- aGGGUGGCCAGGaugagCUCgGGaGGCAUCg -3'
miRNA:   3'- cCUCGCCGGUCCca---GGGaCC-CUGUGG- -5'
28478 5' -62 NC_005946.1 + 29240 0.66 0.571015
Target:  5'- gGGAuGaCGGCaacCAGGGgCCCaGGGGC-CCa -3'
miRNA:   3'- -CCU-C-GCCG---GUCCCaGGGaCCCUGuGG- -5'
28478 5' -62 NC_005946.1 + 85028 0.66 0.561177
Target:  5'- uGGAGCaGGCCGccGcGGUggCCCUGaGGGCAa- -3'
miRNA:   3'- -CCUCG-CCGGU--C-CCA--GGGAC-CCUGUgg -5'
28478 5' -62 NC_005946.1 + 17642 0.66 0.561177
Target:  5'- -aGGUGGCaaAGGGUCCCgccGGaGACgGCCu -3'
miRNA:   3'- ccUCGCCGg-UCCCAGGGa--CC-CUG-UGG- -5'
28478 5' -62 NC_005946.1 + 95289 0.66 0.551385
Target:  5'- gGGAGUGGa-GGGGUCCaCUuucaGcGGCACCa -3'
miRNA:   3'- -CCUCGCCggUCCCAGG-GAc---C-CUGUGG- -5'
28478 5' -62 NC_005946.1 + 91264 0.66 0.551385
Target:  5'- gGGGGaGGCCgacaAGGGcaCCCUGcuGGACGCUu -3'
miRNA:   3'- -CCUCgCCGG----UCCCa-GGGAC--CCUGUGG- -5'
28478 5' -62 NC_005946.1 + 26449 0.66 0.551385
Target:  5'- aGGGGUGGgCCGGGuGgacgCuCCUGGGcuGgACCa -3'
miRNA:   3'- -CCUCGCC-GGUCC-Ca---G-GGACCC--UgUGG- -5'
28478 5' -62 NC_005946.1 + 33757 0.67 0.50332
Target:  5'- cGAGaUGGCCcacGGGG-CCCUGccgguGGugGCCa -3'
miRNA:   3'- cCUC-GCCGG---UCCCaGGGAC-----CCugUGG- -5'
28478 5' -62 NC_005946.1 + 61176 0.67 0.488317
Target:  5'- cGGuGCcucuccccucuccuuGGCUAGGG-CCCUGGuGGC-CCu -3'
miRNA:   3'- -CCuCG---------------CCGGUCCCaGGGACC-CUGuGG- -5'
28478 5' -62 NC_005946.1 + 2987 0.67 0.484599
Target:  5'- aGGAGgGGCCGGcaGGUUUCagGGGAgACa -3'
miRNA:   3'- -CCUCgCCGGUC--CCAGGGa-CCCUgUGg -5'
28478 5' -62 NC_005946.1 + 82730 0.68 0.457165
Target:  5'- aGGGUGucCCAGGGaCCCUGgccgcuccGGACGCCu -3'
miRNA:   3'- cCUCGCc-GGUCCCaGGGAC--------CCUGUGG- -5'
28478 5' -62 NC_005946.1 + 33198 0.68 0.455365
Target:  5'- uGGAcGUGGaCGGGGUCCUgugcggcgugacGGGugACCc -3'
miRNA:   3'- -CCU-CGCCgGUCCCAGGGa-----------CCCugUGG- -5'
28478 5' -62 NC_005946.1 + 69509 0.68 0.439346
Target:  5'- cGGAaccuGCGGgCAGGGaCCC-GGGAgACUu -3'
miRNA:   3'- -CCU----CGCCgGUCCCaGGGaCCCUgUGG- -5'
28478 5' -62 NC_005946.1 + 15418 0.68 0.439346
Target:  5'- aGAGuCGGCCA-GGUCCaCUGuGACGCa -3'
miRNA:   3'- cCUC-GCCGGUcCCAGG-GACcCUGUGg -5'
28478 5' -62 NC_005946.1 + 68681 0.68 0.430586
Target:  5'- uGGGGCuugacaugcaCCA-GGUCCCUGGGACggaaGCCg -3'
miRNA:   3'- -CCUCGcc--------GGUcCCAGGGACCCUG----UGG- -5'
28478 5' -62 NC_005946.1 + 56481 0.69 0.413378
Target:  5'- uGGAGgGGaCGGGGUCCUcguagacGGGAggacCGCCg -3'
miRNA:   3'- -CCUCgCCgGUCCCAGGGa------CCCU----GUGG- -5'
28478 5' -62 NC_005946.1 + 45755 0.69 0.404096
Target:  5'- cGGAGcCGGUCAGGGcUgCCgugguggUGGGGucCACCg -3'
miRNA:   3'- -CCUC-GCCGGUCCC-AgGG-------ACCCU--GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.