miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28479 3' -50.3 NC_005946.1 + 43920 0.67 0.973354
Target:  5'- aGCUGUGGAGGagGCuGGG-GCUGCCc -3'
miRNA:   3'- -CGGCGUUUCCagUGuUUCaCGAUGGa -5'
28479 3' -50.3 NC_005946.1 + 21022 0.67 0.973354
Target:  5'- cCUGCGAgguGGGUCaaggACAGGGUGUUugCg -3'
miRNA:   3'- cGGCGUU---UCCAG----UGUUUCACGAugGa -5'
28479 3' -50.3 NC_005946.1 + 15462 0.67 0.970353
Target:  5'- gGgCGCAGgcuuuGGG-CACAGAGUGUgUACCa -3'
miRNA:   3'- -CgGCGUU-----UCCaGUGUUUCACG-AUGGa -5'
28479 3' -50.3 NC_005946.1 + 86380 0.67 0.963639
Target:  5'- cUUGCGcuGGUauaGCAGAGUGCUGCg- -3'
miRNA:   3'- cGGCGUuuCCAg--UGUUUCACGAUGga -5'
28479 3' -50.3 NC_005946.1 + 61527 0.68 0.95593
Target:  5'- gGCCGUggGGagguguaucucGUUGCAGAGguUGCUGCCc -3'
miRNA:   3'- -CGGCGuuUC-----------CAGUGUUUC--ACGAUGGa -5'
28479 3' -50.3 NC_005946.1 + 85703 0.68 0.95593
Target:  5'- aGCUcaaGCu--GGUCGCAGAGUG-UGCCa -3'
miRNA:   3'- -CGG---CGuuuCCAGUGUUUCACgAUGGa -5'
28479 3' -50.3 NC_005946.1 + 86339 0.68 0.947179
Target:  5'- uGCCGac-GGGagGCaAGAGUGCUGCUg -3'
miRNA:   3'- -CGGCguuUCCagUG-UUUCACGAUGGa -5'
28479 3' -50.3 NC_005946.1 + 92573 0.69 0.932028
Target:  5'- uGCUGCuGGGGUC-CAGGGUGgugGCCg -3'
miRNA:   3'- -CGGCGuUUCCAGuGUUUCACga-UGGa -5'
28479 3' -50.3 NC_005946.1 + 102946 0.69 0.907978
Target:  5'- aCCGCGGAGGUCGCcAGG-GCcuucucGCCUc -3'
miRNA:   3'- cGGCGUUUCCAGUGuUUCaCGa-----UGGA- -5'
28479 3' -50.3 NC_005946.1 + 92010 0.71 0.855634
Target:  5'- gGCCGaGAGGGUCAgGGGGagggugaGCUACCUc -3'
miRNA:   3'- -CGGCgUUUCCAGUgUUUCa------CGAUGGA- -5'
28479 3' -50.3 NC_005946.1 + 57626 0.71 0.838478
Target:  5'- gGCCcggGUAAGGGUgCugGGGGUGCUugCa -3'
miRNA:   3'- -CGG---CGUUUCCA-GugUUUCACGAugGa -5'
28479 3' -50.3 NC_005946.1 + 101273 0.72 0.801647
Target:  5'- gGCgGUggGGGUCACGccaGAGUGCUucAUCa -3'
miRNA:   3'- -CGgCGuuUCCAGUGU---UUCACGA--UGGa -5'
28479 3' -50.3 NC_005946.1 + 42644 0.75 0.644164
Target:  5'- cGCCGCAAAGGUCugAuagaggccagacAGGUacugcgucacGCUGCCc -3'
miRNA:   3'- -CGGCGUUUCCAGugU------------UUCA----------CGAUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.