miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28479 5' -55.2 NC_005946.1 + 32257 0.66 0.866296
Target:  5'- gGGAGGCCGUGGcCaugugUGGgCUGGGg- -3'
miRNA:   3'- -CCUCCGGCGUCuGaa---AUCgGACCUgu -5'
28479 5' -55.2 NC_005946.1 + 91266 0.66 0.858432
Target:  5'- gGGAGGCCGacaaGGGCacccuGC-UGGACGc -3'
miRNA:   3'- -CCUCCGGCg---UCUGaaau-CGgACCUGU- -5'
28479 5' -55.2 NC_005946.1 + 56672 0.66 0.858432
Target:  5'- aGGGGGCUGuCAGACcugccCCUGGGgAa -3'
miRNA:   3'- -CCUCCGGC-GUCUGaaaucGGACCUgU- -5'
28479 5' -55.2 NC_005946.1 + 12026 0.66 0.850349
Target:  5'- cGuGGCCGCAG-CgguagaagAGCCcaggGGACAg -3'
miRNA:   3'- cCuCCGGCGUCuGaaa-----UCGGa---CCUGU- -5'
28479 5' -55.2 NC_005946.1 + 26910 0.66 0.842054
Target:  5'- cGGAGGCgGCGuACgccagGGCCggGGGCc -3'
miRNA:   3'- -CCUCCGgCGUcUGaaa--UCGGa-CCUGu -5'
28479 5' -55.2 NC_005946.1 + 58185 0.66 0.842054
Target:  5'- aGGAGGuCCGUgaGGACguagGGCCUGaACc -3'
miRNA:   3'- -CCUCC-GGCG--UCUGaaa-UCGGACcUGu -5'
28479 5' -55.2 NC_005946.1 + 47956 0.66 0.842054
Target:  5'- gGGAGGgUGUacguggGGAacgUGGCCUGGAUg -3'
miRNA:   3'- -CCUCCgGCG------UCUgaaAUCGGACCUGu -5'
28479 5' -55.2 NC_005946.1 + 88202 0.67 0.833555
Target:  5'- uGGAGgaugaGCCGguGACcgccccCCUGGACAg -3'
miRNA:   3'- -CCUC-----CGGCguCUGaaauc-GGACCUGU- -5'
28479 5' -55.2 NC_005946.1 + 93894 0.67 0.824858
Target:  5'- aGGAGGCCuGCAGGCgguuccuGuUUUGGACc -3'
miRNA:   3'- -CCUCCGG-CGUCUGaaau---C-GGACCUGu -5'
28479 5' -55.2 NC_005946.1 + 56157 0.67 0.824858
Target:  5'- gGGAGGCCG-AGGCguacucUUGGaCC-GGGCAu -3'
miRNA:   3'- -CCUCCGGCgUCUGa-----AAUC-GGaCCUGU- -5'
28479 5' -55.2 NC_005946.1 + 99674 0.67 0.797678
Target:  5'- uGGAGGcCCGUuauGCUgaGGCCcGGGCAc -3'
miRNA:   3'- -CCUCC-GGCGuc-UGAaaUCGGaCCUGU- -5'
28479 5' -55.2 NC_005946.1 + 57851 0.68 0.759238
Target:  5'- cGGGGGCUuuGGAUUUUcugggaGGCCUGGGu- -3'
miRNA:   3'- -CCUCCGGcgUCUGAAA------UCGGACCUgu -5'
28479 5' -55.2 NC_005946.1 + 47329 0.69 0.708553
Target:  5'- uGGAGGuuGCGGAUU----CUUGGGCAg -3'
miRNA:   3'- -CCUCCggCGUCUGAaaucGGACCUGU- -5'
28479 5' -55.2 NC_005946.1 + 17564 0.69 0.698167
Target:  5'- aGGAGGCgGcCGGGCa--GGCaCUGGACc -3'
miRNA:   3'- -CCUCCGgC-GUCUGaaaUCG-GACCUGu -5'
28479 5' -55.2 NC_005946.1 + 10749 0.69 0.698167
Target:  5'- cGGAGGUccuCGCGGGCaucuccAGCCcGGACGu -3'
miRNA:   3'- -CCUCCG---GCGUCUGaaa---UCGGaCCUGU- -5'
28479 5' -55.2 NC_005946.1 + 85061 0.69 0.68143
Target:  5'- aGGcuGCgGCAGACgccguggcaaagAGCCUGGACu -3'
miRNA:   3'- -CCucCGgCGUCUGaaa---------UCGGACCUGu -5'
28479 5' -55.2 NC_005946.1 + 86230 0.69 0.677226
Target:  5'- gGGAGGCCGagaGGGCcucgGGUCaguUGGGCAa -3'
miRNA:   3'- -CCUCCGGCg--UCUGaaa-UCGG---ACCUGU- -5'
28479 5' -55.2 NC_005946.1 + 17271 0.7 0.634944
Target:  5'- uGAGGCCuuccugggaGCGGugUgcaUGGCCgUGGACGa -3'
miRNA:   3'- cCUCCGG---------CGUCugAa--AUCGG-ACCUGU- -5'
28479 5' -55.2 NC_005946.1 + 41752 0.73 0.460685
Target:  5'- uGGAGGaugaCCGUGGACccgAGCUUGGGCAc -3'
miRNA:   3'- -CCUCC----GGCGUCUGaaaUCGGACCUGU- -5'
28479 5' -55.2 NC_005946.1 + 11881 0.74 0.441712
Target:  5'- aGGAGGCUGguGAUUgccagGGCCcgcagGGACGc -3'
miRNA:   3'- -CCUCCGGCguCUGAaa---UCGGa----CCUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.