miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
28480	3'	-61.8	NC_005946.1	+	69888	0.66	0.573502
	Target:  5'- uCCCUgGCcucauaCGGAguggCCUCCaGGGCCUc -3' miRNA:   3'- cGGGAgCGc-----GUCUa---GGAGGaCCCGGA- -5'
28480	3'	-61.8	NC_005946.1	+	71308	0.66	0.562522
	Target:  5'- cGUCCcCGCGCccgugcuGGAUCC-CCUgaagacggccaGGGCCUu -3' miRNA:   3'- -CGGGaGCGCG-------UCUAGGaGGA-----------CCCGGA- -5'
28480	3'	-61.8	NC_005946.1	+	103025	0.66	0.55358
	Target:  5'- uGUCCUCGCa-GGAcgCCggCUGGGCCa -3' miRNA:   3'- -CGGGAGCGcgUCUa-GGagGACCCGGa -5'
28480	3'	-61.8	NC_005946.1	+	23971	0.66	0.55358
	Target:  5'- cGCCCUCaucuGCGUAGAcugCUUCaaGGGCUc -3' miRNA:   3'- -CGGGAG----CGCGUCUa--GGAGgaCCCGGa -5'
28480	3'	-61.8	NC_005946.1	+	78078	0.66	0.55358
	Target:  5'- gGCCCUCcuCGaCAGcUUgUCCUcGGGCCUc -3' miRNA:   3'- -CGGGAGc-GC-GUCuAGgAGGA-CCCGGA- -5'
28480	3'	-61.8	NC_005946.1	+	60697	0.68	0.422212
	Target:  5'- gGUCCUCccgGCGCAGGUCCUCagguaguaGaGGCCc -3' miRNA:   3'- -CGGGAG---CGCGUCUAGGAGga------C-CCGGa -5'
28480	3'	-61.8	NC_005946.1	+	63561	0.68	0.422212
	Target:  5'- gGCCC-CGCGUcguccgcuaucAGAUCCccgCCUuGGCCUa -3' miRNA:   3'- -CGGGaGCGCG-----------UCUAGGa--GGAcCCGGA- -5'
28480	3'	-61.8	NC_005946.1	+	28356	0.69	0.379982
	Target:  5'- uGCCCgggcuaGC-CAGGUcCCUCCUuaGGGCCg -3' miRNA:   3'- -CGGGag----CGcGUCUA-GGAGGA--CCCGGa -5'
28480	3'	-61.8	NC_005946.1	+	10489	0.69	0.371881
	Target:  5'- aGCCggCGCgGCGGGUCCUCCaaaaccGGCCa -3' miRNA:   3'- -CGGgaGCG-CGUCUAGGAGGac----CCGGa -5'
28480	3'	-61.8	NC_005946.1	+	77984	0.78	0.097243
	Target:  5'- cGCUCUCGCcUGGcAUCCUCUUGGGCCUc -3' miRNA:   3'- -CGGGAGCGcGUC-UAGGAGGACCCGGA- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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