Results 1 - 17 of 17 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28485 | 3' | -55.4 | NC_005946.1 | + | 47855 | 0.66 | 0.87012 |
Target: 5'- gGGAUauaCGGCgAGGGCugUGACCUg-- -3' miRNA: 3'- -CUUAg--GUUGgUCCCGugGCUGGAguc -5' |
|||||||
28485 | 3' | -55.4 | NC_005946.1 | + | 37351 | 0.66 | 0.87012 |
Target: 5'- aGggUCCuggccCCAGGGCACuCGcuuuCCgUCGGc -3' miRNA: 3'- -CuuAGGuu---GGUCCCGUG-GCu---GG-AGUC- -5' |
|||||||
28485 | 3' | -55.4 | NC_005946.1 | + | 91764 | 0.66 | 0.837877 |
Target: 5'- uAGUCaugGACgAGGuGCACC-ACCUCAGg -3' miRNA: 3'- cUUAGg--UUGgUCC-CGUGGcUGGAGUC- -5' |
|||||||
28485 | 3' | -55.4 | NC_005946.1 | + | 53750 | 0.67 | 0.811573 |
Target: 5'- aGAAcCCAAU--GGGCACUGuCCUCGGu -3' miRNA: 3'- -CUUaGGUUGguCCCGUGGCuGGAGUC- -5' |
|||||||
28485 | 3' | -55.4 | NC_005946.1 | + | 70757 | 0.67 | 0.799675 |
Target: 5'- ---gCCu-CCAGGGCagcacucaagccugACgGACCUCAGg -3' miRNA: 3'- cuuaGGuuGGUCCCG--------------UGgCUGGAGUC- -5' |
|||||||
28485 | 3' | -55.4 | NC_005946.1 | + | 32908 | 0.67 | 0.783706 |
Target: 5'- -----gAGCCAGGGUgaGCC-ACCUCAGg -3' miRNA: 3'- cuuaggUUGGUCCCG--UGGcUGGAGUC- -5' |
|||||||
28485 | 3' | -55.4 | NC_005946.1 | + | 103670 | 0.68 | 0.744563 |
Target: 5'- ---cCCGACCAGGaCGCCGcCCUgGGc -3' miRNA: 3'- cuuaGGUUGGUCCcGUGGCuGGAgUC- -5' |
|||||||
28485 | 3' | -55.4 | NC_005946.1 | + | 91524 | 0.68 | 0.734489 |
Target: 5'- uAGUCCuGGCCAGGGgAgCGGcgcuCCUCAGa -3' miRNA: 3'- cUUAGG-UUGGUCCCgUgGCU----GGAGUC- -5' |
|||||||
28485 | 3' | -55.4 | NC_005946.1 | + | 46119 | 0.69 | 0.672406 |
Target: 5'- --uUCCAAaaCAGGGCACCGuaACCgUCGGu -3' miRNA: 3'- cuuAGGUUg-GUCCCGUGGC--UGG-AGUC- -5' |
|||||||
28485 | 3' | -55.4 | NC_005946.1 | + | 58661 | 0.7 | 0.651327 |
Target: 5'- cGggUCCGAgaaaccguCCAcGGGCuugACgGACCUCAGc -3' miRNA: 3'- -CuuAGGUU--------GGU-CCCG---UGgCUGGAGUC- -5' |
|||||||
28485 | 3' | -55.4 | NC_005946.1 | + | 94665 | 0.7 | 0.651327 |
Target: 5'- ---cCCuGCuCAGGGguCCGACCUCGc -3' miRNA: 3'- cuuaGGuUG-GUCCCguGGCUGGAGUc -5' |
|||||||
28485 | 3' | -55.4 | NC_005946.1 | + | 30731 | 0.71 | 0.577491 |
Target: 5'- gGggUCCAccACCccGGCACCGACgUCu- -3' miRNA: 3'- -CuuAGGU--UGGucCCGUGGCUGgAGuc -5' |
|||||||
28485 | 3' | -55.4 | NC_005946.1 | + | 8269 | 0.72 | 0.525827 |
Target: 5'- --uUgCAGCCAGGaGC-UCGACCUCGGg -3' miRNA: 3'- cuuAgGUUGGUCC-CGuGGCUGGAGUC- -5' |
|||||||
28485 | 3' | -55.4 | NC_005946.1 | + | 11162 | 0.73 | 0.466316 |
Target: 5'- cGggUCaCAGCaucaAGGGCACCGuCCUCc- -3' miRNA: 3'- -CuuAG-GUUGg---UCCCGUGGCuGGAGuc -5' |
|||||||
28485 | 3' | -55.4 | NC_005946.1 | + | 38169 | 0.73 | 0.456733 |
Target: 5'- --cUCCAGguCCAGGGcCACCacgguGACCUCGGg -3' miRNA: 3'- cuuAGGUU--GGUCCC-GUGG-----CUGGAGUC- -5' |
|||||||
28485 | 3' | -55.4 | NC_005946.1 | + | 79263 | 0.76 | 0.335001 |
Target: 5'- ---aCCAGCCAGGGgACCGugCagcUCAGg -3' miRNA: 3'- cuuaGGUUGGUCCCgUGGCugG---AGUC- -5' |
|||||||
28485 | 3' | -55.4 | NC_005946.1 | + | 29530 | 0.8 | 0.180305 |
Target: 5'- uGggUCCAACCggucccagcGGGGCGCCugGAUCUCAGg -3' miRNA: 3'- -CuuAGGUUGG---------UCCCGUGG--CUGGAGUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home