miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28498 5' -55.3 NC_005946.1 + 57959 0.66 0.882439
Target:  5'- gGCCAU-CACCCUCccgGCGGcCUCcaUGAGc -3'
miRNA:   3'- gCGGUGuGUGGGAG---UGUCuGAG--ACUC- -5'
28498 5' -55.3 NC_005946.1 + 49198 0.66 0.859756
Target:  5'- gGUCAUgaGCCUcCACAGGgUCUGAGg -3'
miRNA:   3'- gCGGUGugUGGGaGUGUCUgAGACUC- -5'
28498 5' -55.3 NC_005946.1 + 24210 0.66 0.843532
Target:  5'- cCGCCAgCAuCGCCaCUCAgAGuuUUCUGAGa -3'
miRNA:   3'- -GCGGU-GU-GUGG-GAGUgUCu-GAGACUC- -5'
28498 5' -55.3 NC_005946.1 + 76050 0.67 0.83511
Target:  5'- gGCCACAaACUUUU-CAGACUCUGGc -3'
miRNA:   3'- gCGGUGUgUGGGAGuGUCUGAGACUc -5'
28498 5' -55.3 NC_005946.1 + 47909 0.67 0.825621
Target:  5'- aCGCCGgcaacguagcgUACGgaggaucUCCUC-CAGACUCUGAGc -3'
miRNA:   3'- -GCGGU-----------GUGU-------GGGAGuGUCUGAGACUC- -5'
28498 5' -55.3 NC_005946.1 + 42086 0.67 0.808704
Target:  5'- -aCCACAgGCCCUCuugacgUAGGgUCUGGGg -3'
miRNA:   3'- gcGGUGUgUGGGAGu-----GUCUgAGACUC- -5'
28498 5' -55.3 NC_005946.1 + 60450 0.67 0.808704
Target:  5'- uCGUCGCGCGCUCUgACccgguagagucAGACUCUGc- -3'
miRNA:   3'- -GCGGUGUGUGGGAgUG-----------UCUGAGACuc -5'
28498 5' -55.3 NC_005946.1 + 10449 0.67 0.79955
Target:  5'- cCGCCGCAggugggagACCCgcCGCAGGCUC-GAGa -3'
miRNA:   3'- -GCGGUGUg-------UGGGa-GUGUCUGAGaCUC- -5'
28498 5' -55.3 NC_005946.1 + 79321 0.68 0.780768
Target:  5'- cCGCCuccCACACCUUggaGCAGAUUggcCUGAGg -3'
miRNA:   3'- -GCGGu--GUGUGGGAg--UGUCUGA---GACUC- -5'
28498 5' -55.3 NC_005946.1 + 77989 0.68 0.771161
Target:  5'- uCGCCugGCAUCCUCuuGGGcCUCaUGAc -3'
miRNA:   3'- -GCGGugUGUGGGAGugUCU-GAG-ACUc -5'
28498 5' -55.3 NC_005946.1 + 56359 0.69 0.711101
Target:  5'- uGCCGCAaaGCuCCUgACGGACUCUuGGGu -3'
miRNA:   3'- gCGGUGUg-UG-GGAgUGUCUGAGA-CUC- -5'
28498 5' -55.3 NC_005946.1 + 48885 0.7 0.669499
Target:  5'- uGCCugACuuCCUCGgGGugUCUGGa -3'
miRNA:   3'- gCGGugUGugGGAGUgUCugAGACUc -5'
28498 5' -55.3 NC_005946.1 + 72020 0.7 0.648466
Target:  5'- -cCCACACACCCUCcgguauGgAGGCgUCUGGGc -3'
miRNA:   3'- gcGGUGUGUGGGAG------UgUCUG-AGACUC- -5'
28498 5' -55.3 NC_005946.1 + 92773 0.72 0.554113
Target:  5'- gGCagggACACACCCaggucCAUAGACUCUGAc -3'
miRNA:   3'- gCGg---UGUGUGGGa----GUGUCUGAGACUc -5'
28498 5' -55.3 NC_005946.1 + 94572 0.74 0.445246
Target:  5'- cCGCCGC-CACCCUCGCGccGGCUCcGGc -3'
miRNA:   3'- -GCGGUGuGUGGGAGUGU--CUGAGaCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.