miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28502 3' -58.8 NC_005946.1 + 41927 0.66 0.739789
Target:  5'- cGCGGCCUucaugagggacgcGGGGGGUaucucugaCCCGUcugcgaUGG-CCCu -3'
miRNA:   3'- -UGCCGGG-------------UUUCCCA--------GGGCA------ACCaGGG- -5'
28502 3' -58.8 NC_005946.1 + 26291 0.66 0.730994
Target:  5'- cUGGCCCuGAGGG-CCCGcaGaGUCUa -3'
miRNA:   3'- uGCCGGGuUUCCCaGGGCaaC-CAGGg -5'
28502 3' -58.8 NC_005946.1 + 29170 0.66 0.721142
Target:  5'- aACGGCgCAAAGGGgcCCCGcgGG-CgCa -3'
miRNA:   3'- -UGCCGgGUUUCCCa-GGGCaaCCaGgG- -5'
28502 3' -58.8 NC_005946.1 + 83822 0.66 0.711213
Target:  5'- -gGGCCCucccccuuGAuGGUCCUGccGGUCCUg -3'
miRNA:   3'- ugCCGGGu-------UUcCCAGGGCaaCCAGGG- -5'
28502 3' -58.8 NC_005946.1 + 46306 0.66 0.711213
Target:  5'- -aGGCCaaGAGGGGUCCUa-UGG-CCCu -3'
miRNA:   3'- ugCCGGg-UUUCCCAGGGcaACCaGGG- -5'
28502 3' -58.8 NC_005946.1 + 94829 0.67 0.691164
Target:  5'- cCaGCCCc-AGGGUCUCGUacacGUCCCa -3'
miRNA:   3'- uGcCGGGuuUCCCAGGGCAac--CAGGG- -5'
28502 3' -58.8 NC_005946.1 + 97153 0.67 0.688138
Target:  5'- cCuGCCCAGGGGaGaUCCGUccgccgucuccaugUGGUCCCc -3'
miRNA:   3'- uGcCGGGUUUCC-CaGGGCA--------------ACCAGGG- -5'
28502 3' -58.8 NC_005946.1 + 11900 0.67 0.681061
Target:  5'- -gGGCCCGcAGGGacgcCCCGgccGUCCUg -3'
miRNA:   3'- ugCCGGGUuUCCCa---GGGCaacCAGGG- -5'
28502 3' -58.8 NC_005946.1 + 61023 0.67 0.660744
Target:  5'- gACGGCCUGGuGGGaaCCCacccUGGUCCUg -3'
miRNA:   3'- -UGCCGGGUUuCCCa-GGGca--ACCAGGG- -5'
28502 3' -58.8 NC_005946.1 + 23657 0.68 0.623987
Target:  5'- gACGGCCaUAGGGGGUCaccacaccgugucggCCGUacccaccgGGUCCg -3'
miRNA:   3'- -UGCCGG-GUUUCCCAG---------------GGCAa-------CCAGGg -5'
28502 3' -58.8 NC_005946.1 + 19218 0.68 0.619901
Target:  5'- gACGGUCUgAGAGaGGUCCCugcaccauucuGUgcUGGUCCUg -3'
miRNA:   3'- -UGCCGGG-UUUC-CCAGGG-----------CA--ACCAGGG- -5'
28502 3' -58.8 NC_005946.1 + 39563 0.68 0.609694
Target:  5'- -aGGCCCuGAGGGagacCCCGUacGUCUCu -3'
miRNA:   3'- ugCCGGGuUUCCCa---GGGCAacCAGGG- -5'
28502 3' -58.8 NC_005946.1 + 83658 0.68 0.609694
Target:  5'- cCGGUCCu-AGGGuUCCUGgugGGaUCCCu -3'
miRNA:   3'- uGCCGGGuuUCCC-AGGGCaa-CC-AGGG- -5'
28502 3' -58.8 NC_005946.1 + 103655 0.68 0.609694
Target:  5'- uCGGCCCAcAGGGGcCCCGaccaGGacgccgCCCu -3'
miRNA:   3'- uGCCGGGU-UUCCCaGGGCaa--CCa-----GGG- -5'
28502 3' -58.8 NC_005946.1 + 83448 0.68 0.609694
Target:  5'- cCGGUCCu-AGGGuUCCUGgugGGaUCCCu -3'
miRNA:   3'- uGCCGGGuuUCCC-AGGGCaa-CC-AGGG- -5'
28502 3' -58.8 NC_005946.1 + 57625 0.68 0.599503
Target:  5'- -aGGCCCGgguAAGGGUgCUGggGGUgCUu -3'
miRNA:   3'- ugCCGGGU---UUCCCAgGGCaaCCAgGG- -5'
28502 3' -58.8 NC_005946.1 + 33760 0.68 0.599503
Target:  5'- gAUGGCCCAcGGGGcCCUGccggUGGUggCCa -3'
miRNA:   3'- -UGCCGGGUuUCCCaGGGCa---ACCA--GGg -5'
28502 3' -58.8 NC_005946.1 + 76176 0.68 0.599503
Target:  5'- gGCGGUC---AGGGUCCUGgugUGGUUgCa -3'
miRNA:   3'- -UGCCGGguuUCCCAGGGCa--ACCAGgG- -5'
28502 3' -58.8 NC_005946.1 + 95220 0.68 0.589336
Target:  5'- gACGGCCagca-GGUCCaGgaGGUCCCu -3'
miRNA:   3'- -UGCCGGguuucCCAGGgCaaCCAGGG- -5'
28502 3' -58.8 NC_005946.1 + 56257 0.68 0.588321
Target:  5'- gACaGCCCAgucugcuucggcaAAGGGUCCCGg-GGcCUCg -3'
miRNA:   3'- -UGcCGGGU-------------UUCCCAGGGCaaCCaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.