miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28503 5' -55 NC_005946.1 + 60384 0.66 0.871482
Target:  5'- aGGCcacgguGUCGGAgacuGCUGGUcucAGGGAGGCg -3'
miRNA:   3'- -CCGuu----CGGCCU----CGACCG---UCUCUUUGa -5'
28503 5' -55 NC_005946.1 + 50955 0.66 0.871482
Target:  5'- cGGCAgcagcaagcgcAGCCuGAGgaGGCuGAGGAuGCUg -3'
miRNA:   3'- -CCGU-----------UCGGcCUCgaCCGuCUCUU-UGA- -5'
28503 5' -55 NC_005946.1 + 31904 0.66 0.871482
Target:  5'- -cCAGGCUGGAGCUGuGCA-AGAuACc -3'
miRNA:   3'- ccGUUCGGCCUCGAC-CGUcUCUuUGa -5'
28503 5' -55 NC_005946.1 + 71125 0.66 0.863725
Target:  5'- gGGCuuGgCGGcGGCggGGUAGGGGGACUu -3'
miRNA:   3'- -CCGuuCgGCC-UCGa-CCGUCUCUUUGA- -5'
28503 5' -55 NC_005946.1 + 29247 0.66 0.863725
Target:  5'- cGGCAaccaggGGCCcaGGGGCccagggGaGCAGAGGGACc -3'
miRNA:   3'- -CCGU------UCGG--CCUCGa-----C-CGUCUCUUUGa -5'
28503 5' -55 NC_005946.1 + 44710 0.66 0.863725
Target:  5'- gGGCAGGCUGaGGGCcaaCGGGGGGACc -3'
miRNA:   3'- -CCGUUCGGC-CUCGaccGUCUCUUUGa -5'
28503 5' -55 NC_005946.1 + 92429 0.66 0.847539
Target:  5'- uGGCAaacgGGUggaGGAGagccaccGGCAGGGAGACUa -3'
miRNA:   3'- -CCGU----UCGg--CCUCga-----CCGUCUCUUUGA- -5'
28503 5' -55 NC_005946.1 + 91994 0.67 0.830506
Target:  5'- -uCAAGCCcgacGAGCUGGCcGAGAGGg- -3'
miRNA:   3'- ccGUUCGGc---CUCGACCGuCUCUUUga -5'
28503 5' -55 NC_005946.1 + 43898 0.67 0.830506
Target:  5'- cGGCAAGaccuucaugccCUGGAGCUGuGgAG-GAGGCUg -3'
miRNA:   3'- -CCGUUC-----------GGCCUCGAC-CgUCuCUUUGA- -5'
28503 5' -55 NC_005946.1 + 29332 0.67 0.797921
Target:  5'- cGGuCGGGCCcgugGGAGCggcugggccucaggGGCAGAGggGa- -3'
miRNA:   3'- -CC-GUUCGG----CCUCGa-------------CCGUCUCuuUga -5'
28503 5' -55 NC_005946.1 + 100867 0.68 0.765207
Target:  5'- --gAAGCUGGGGgaGGCGGuguGGAACg -3'
miRNA:   3'- ccgUUCGGCCUCgaCCGUCu--CUUUGa -5'
28503 5' -55 NC_005946.1 + 77310 0.69 0.704115
Target:  5'- uGGCGucGGCCGGGGCcgUGGUgccgGGAGucACa -3'
miRNA:   3'- -CCGU--UCGGCCUCG--ACCG----UCUCuuUGa -5'
28503 5' -55 NC_005946.1 + 8046 0.69 0.693642
Target:  5'- uGGCcuguGGCCGGGGCggGGUugauGAGAucGCUg -3'
miRNA:   3'- -CCGu---UCGGCCUCGa-CCGu---CUCUu-UGA- -5'
28503 5' -55 NC_005946.1 + 32523 0.71 0.577931
Target:  5'- aGGCAcguccuGGCCGGAGaaauauuucuccacGGCGGAGAcGCUg -3'
miRNA:   3'- -CCGU------UCGGCCUCga------------CCGUCUCUuUGA- -5'
28503 5' -55 NC_005946.1 + 34124 0.72 0.535109
Target:  5'- cGGCGGGCaCGGucCUGGUGGGGAAGgUg -3'
miRNA:   3'- -CCGUUCG-GCCucGACCGUCUCUUUgA- -5'
28503 5' -55 NC_005946.1 + 93167 0.72 0.52893
Target:  5'- aGGCAGGCUGGAGCUGucuGCucccuacgguuccucGGAGGAGg- -3'
miRNA:   3'- -CCGUUCGGCCUCGAC---CG---------------UCUCUUUga -5'
28503 5' -55 NC_005946.1 + 78883 0.73 0.484508
Target:  5'- cGGCGAgguccGCCGuGAGCaUGGCAGuGAGAUc -3'
miRNA:   3'- -CCGUU-----CGGC-CUCG-ACCGUCuCUUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.