miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28505 3' -59.8 NC_005946.1 + 49897 0.66 0.702654
Target:  5'- gUCGUGGUCCCCuuguagaGCUuucucAUGGCGUCu -3'
miRNA:   3'- -GGCACCGGGGGuug----CGGu----UGUCGCGG- -5'
28505 3' -59.8 NC_005946.1 + 14931 0.66 0.682679
Target:  5'- cUCGUGGUUCCCuuccuaccccUGCCucCGGCGUCu -3'
miRNA:   3'- -GGCACCGGGGGuu--------GCGGuuGUCGCGG- -5'
28505 3' -59.8 NC_005946.1 + 91005 0.66 0.682679
Target:  5'- uUGUGGCCCgCUAugGgaGACGGaGCCc -3'
miRNA:   3'- gGCACCGGG-GGUugCggUUGUCgCGG- -5'
28505 3' -59.8 NC_005946.1 + 24189 0.66 0.672626
Target:  5'- aCC-UGGacgcccuaCCCCUGGcCGCCAGCAuCGCCa -3'
miRNA:   3'- -GGcACC--------GGGGGUU-GCGGUUGUcGCGG- -5'
28505 3' -59.8 NC_005946.1 + 52471 0.66 0.672626
Target:  5'- aCCGUGGaCCgUgGACGCCAAaGGgGUa -3'
miRNA:   3'- -GGCACC-GGgGgUUGCGGUUgUCgCGg -5'
28505 3' -59.8 NC_005946.1 + 43110 0.66 0.672626
Target:  5'- uCCaUGGCCCUguAgGCCAggGCAGCcuuCCa -3'
miRNA:   3'- -GGcACCGGGGguUgCGGU--UGUCGc--GG- -5'
28505 3' -59.8 NC_005946.1 + 64511 0.66 0.66254
Target:  5'- uCCGUcccuGCCCCCGucaggguccGCGUaCAGCAGCGaCg -3'
miRNA:   3'- -GGCAc---CGGGGGU---------UGCG-GUUGUCGCgG- -5'
28505 3' -59.8 NC_005946.1 + 94571 0.66 0.65243
Target:  5'- cCCGccGCCaCCCucGCGCCGgcuccggcACAGUGCUc -3'
miRNA:   3'- -GGCacCGG-GGGu-UGCGGU--------UGUCGCGG- -5'
28505 3' -59.8 NC_005946.1 + 104920 0.67 0.646356
Target:  5'- aUGUGGCCCUgccucauccugugagCAGauuCCAcCAGCGCCu -3'
miRNA:   3'- gGCACCGGGG---------------GUUgc-GGUuGUCGCGG- -5'
28505 3' -59.8 NC_005946.1 + 20432 0.67 0.642304
Target:  5'- gUCGggagGGCgCUU-ACGCCAACAG-GCCa -3'
miRNA:   3'- -GGCa---CCGgGGGuUGCGGUUGUCgCGG- -5'
28505 3' -59.8 NC_005946.1 + 29515 0.67 0.642304
Target:  5'- ---aGGCCCCCGgaGCGguggguCCAACcggucccagcggGGCGCCu -3'
miRNA:   3'- ggcaCCGGGGGU--UGC------GGUUG------------UCGCGG- -5'
28505 3' -59.8 NC_005946.1 + 47481 0.67 0.622037
Target:  5'- aCGUcauGGCCCUCGccaaaGCCGuagACGGCGCa -3'
miRNA:   3'- gGCA---CCGGGGGUug---CGGU---UGUCGCGg -5'
28505 3' -59.8 NC_005946.1 + 54328 0.67 0.622037
Target:  5'- -gGUGGUCCCa---GCgGugGGUGCCa -3'
miRNA:   3'- ggCACCGGGGguugCGgUugUCGCGG- -5'
28505 3' -59.8 NC_005946.1 + 95200 0.67 0.611911
Target:  5'- aCCGUGGCUgugcugggUCUGACgGCCAGCAG-GUCc -3'
miRNA:   3'- -GGCACCGG--------GGGUUG-CGGUUGUCgCGG- -5'
28505 3' -59.8 NC_005946.1 + 31813 0.67 0.611911
Target:  5'- gCGaUGGCCaggaggaCCGACGCCAccuaccacucuGCGGCGgUg -3'
miRNA:   3'- gGC-ACCGGg------GGUUGCGGU-----------UGUCGCgG- -5'
28505 3' -59.8 NC_005946.1 + 64051 0.67 0.611911
Target:  5'- cCUGcGGCCCCUGGuCGCCcauggGACcccuGGUGCCg -3'
miRNA:   3'- -GGCaCCGGGGGUU-GCGG-----UUG----UCGCGG- -5'
28505 3' -59.8 NC_005946.1 + 25958 0.68 0.571626
Target:  5'- --cUGGCCCaucugGACGCCGA-GGCGCCc -3'
miRNA:   3'- ggcACCGGGgg---UUGCGGUUgUCGCGG- -5'
28505 3' -59.8 NC_005946.1 + 69948 0.68 0.561644
Target:  5'- cCCGcGGCCCuugCCAcggcCGCCGcCAGgGCCc -3'
miRNA:   3'- -GGCaCCGGG---GGUu---GCGGUuGUCgCGG- -5'
28505 3' -59.8 NC_005946.1 + 57376 0.68 0.561644
Target:  5'- cCCGUGGUCCUCAGCGCgAAaaacuuggaccCAGUcuCCu -3'
miRNA:   3'- -GGCACCGGGGGUUGCGgUU-----------GUCGc-GG- -5'
28505 3' -59.8 NC_005946.1 + 85008 0.68 0.551709
Target:  5'- cCUGUcGGCCUCaGACGCCcuggAGCAG-GCCg -3'
miRNA:   3'- -GGCA-CCGGGGgUUGCGG----UUGUCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.