Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28510 | 3' | -58.8 | NC_005946.1 | + | 11185 | 0.66 | 0.761817 |
Target: 5'- gUCCUCCCagaggguUCcACGGGGGCCCucagaggaggauuggCGUCg -3' miRNA: 3'- -AGGAGGGc------AGaUGCUCCUGGG---------------GCAGg -5' |
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28510 | 3' | -58.8 | NC_005946.1 | + | 11465 | 0.66 | 0.729306 |
Target: 5'- aCCUCgCCGcCcugGUGAGGGCCCUGccuUCCg -3' miRNA: 3'- aGGAG-GGCaGa--UGCUCCUGGGGC---AGG- -5' |
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28510 | 3' | -58.8 | NC_005946.1 | + | 25505 | 0.67 | 0.719549 |
Target: 5'- cUCUUgCCGUCUcccgcaaaGAGGACcagCCUGUCCc -3' miRNA: 3'- -AGGAgGGCAGAug------CUCCUG---GGGCAGG- -5' |
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28510 | 3' | -58.8 | NC_005946.1 | + | 30071 | 0.71 | 0.472547 |
Target: 5'- -aUUCCCauggcGUCgGCGAGGACCaCGUCCu -3' miRNA: 3'- agGAGGG-----CAGaUGCUCCUGGgGCAGG- -5' |
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28510 | 3' | -58.8 | NC_005946.1 | + | 32341 | 0.69 | 0.553247 |
Target: 5'- cCCUCCucauggagcagcacgCGUCcgccccCGAGGACCCCGUg- -3' miRNA: 3'- aGGAGG---------------GCAGau----GCUCCUGGGGCAgg -5' |
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28510 | 3' | -58.8 | NC_005946.1 | + | 33172 | 0.68 | 0.659773 |
Target: 5'- ---gUCCGgcgCUGCGGGGuCCgCGUCCg -3' miRNA: 3'- aggaGGGCa--GAUGCUCCuGGgGCAGG- -5' |
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28510 | 3' | -58.8 | NC_005946.1 | + | 34004 | 0.68 | 0.619374 |
Target: 5'- ---aCCCGUCgugcGCGGGGGCCCUugCCa -3' miRNA: 3'- aggaGGGCAGa---UGCUCCUGGGGcaGG- -5' |
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28510 | 3' | -58.8 | NC_005946.1 | + | 41957 | 0.72 | 0.43093 |
Target: 5'- cUCUgaCCCGUCUGCGAuGGCCCucagccucugcacugCGUCCa -3' miRNA: 3'- -AGGa-GGGCAGAUGCUcCUGGG---------------GCAGG- -5' |
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28510 | 3' | -58.8 | NC_005946.1 | + | 42406 | 0.72 | 0.401588 |
Target: 5'- gCCUCCCGUUgACGAcGuGACCCaCGUgCa -3' miRNA: 3'- aGGAGGGCAGaUGCU-C-CUGGG-GCAgG- -5' |
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28510 | 3' | -58.8 | NC_005946.1 | + | 43766 | 0.71 | 0.436237 |
Target: 5'- gCCUCCCGcUCacgGCGcagccagggagaGGGGCUCCGUCUc -3' miRNA: 3'- aGGAGGGC-AGa--UGC------------UCCUGGGGCAGG- -5' |
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28510 | 3' | -58.8 | NC_005946.1 | + | 44189 | 0.69 | 0.579122 |
Target: 5'- gUCCUCuuGUCUGUGAGG-CCCUcUCa -3' miRNA: 3'- -AGGAGggCAGAUGCUCCuGGGGcAGg -5' |
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28510 | 3' | -58.8 | NC_005946.1 | + | 47990 | 0.7 | 0.491266 |
Target: 5'- aCCUCuuGgCUGCcAGGGCCCUGUUg -3' miRNA: 3'- aGGAGggCaGAUGcUCCUGGGGCAGg -5' |
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28510 | 3' | -58.8 | NC_005946.1 | + | 61267 | 0.66 | 0.748568 |
Target: 5'- gCCUCCUcagaGUCgaaGGGGAUCCUGUgCu -3' miRNA: 3'- aGGAGGG----CAGaugCUCCUGGGGCAgG- -5' |
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28510 | 3' | -58.8 | NC_005946.1 | + | 64409 | 0.66 | 0.729306 |
Target: 5'- aCCUgugCCGcC-ACGGGGACCCgCGUCa -3' miRNA: 3'- aGGAg--GGCaGaUGCUCCUGGG-GCAGg -5' |
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28510 | 3' | -58.8 | NC_005946.1 | + | 70110 | 0.88 | 0.040172 |
Target: 5'- uUCCUCCCGUCUcccuUGAGGACCCUGaUCCu -3' miRNA: 3'- -AGGAGGGCAGAu---GCUCCUGGGGC-AGG- -5' |
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28510 | 3' | -58.8 | NC_005946.1 | + | 71792 | 0.69 | 0.5992 |
Target: 5'- gUCCUCCUGUUUACaGGGccguaGCCCUGaagcUCCc -3' miRNA: 3'- -AGGAGGGCAGAUGcUCC-----UGGGGC----AGG- -5' |
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28510 | 3' | -58.8 | NC_005946.1 | + | 76381 | 0.81 | 0.112824 |
Target: 5'- uUUCUCCCagagaCUAUGAGGACCUCGUCCu -3' miRNA: 3'- -AGGAGGGca---GAUGCUCCUGGGGCAGG- -5' |
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28510 | 3' | -58.8 | NC_005946.1 | + | 76415 | 0.67 | 0.719549 |
Target: 5'- gUCCUCCUGcuagcuccUCUGCGAG-ACCC--UCCa -3' miRNA: 3'- -AGGAGGGC--------AGAUGCUCcUGGGgcAGG- -5' |
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28510 | 3' | -58.8 | NC_005946.1 | + | 78104 | 0.69 | 0.5992 |
Target: 5'- gCCUCCCGUCccucAGGcACCCC-UCCc -3' miRNA: 3'- aGGAGGGCAGaugcUCC-UGGGGcAGG- -5' |
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28510 | 3' | -58.8 | NC_005946.1 | + | 78874 | 0.66 | 0.729306 |
Target: 5'- gCCUgUCGUCgGCGAGGuCCgCCGUg- -3' miRNA: 3'- aGGAgGGCAGaUGCUCCuGG-GGCAgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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