miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28518 5' -61.3 NC_005946.1 + 32658 0.66 0.629675
Target:  5'- aGGGuGGACGCCAccGGGCCccucaUCGccuuccuCCUGGa -3'
miRNA:   3'- -CCC-UCUGCGGU--UCCGG-----AGCcc-----GGACC- -5'
28518 5' -61.3 NC_005946.1 + 47797 0.66 0.629675
Target:  5'- aGGAGugGCCGcGGCgC-CGGGCa--- -3'
miRNA:   3'- cCCUCugCGGUuCCG-GaGCCCGgacc -5'
28518 5' -61.3 NC_005946.1 + 29549 0.66 0.619645
Target:  5'- -cGGGGCGCCu-GGaUCUCaGGGCCcGGa -3'
miRNA:   3'- ccCUCUGCGGuuCC-GGAG-CCCGGaCC- -5'
28518 5' -61.3 NC_005946.1 + 56280 0.66 0.609625
Target:  5'- aGGGu--C-CCGGGGCCUCGaaCCUGGg -3'
miRNA:   3'- -CCCucuGcGGUUCCGGAGCccGGACC- -5'
28518 5' -61.3 NC_005946.1 + 78018 0.66 0.609625
Target:  5'- cGGAGAguuguccgggUGCCu-GGCCUUGGGgaUGGg -3'
miRNA:   3'- cCCUCU----------GCGGuuCCGGAGCCCggACC- -5'
28518 5' -61.3 NC_005946.1 + 29239 0.66 0.599621
Target:  5'- gGGGAuGACGgCAaccagGGGCCcagGGGCCcagGGg -3'
miRNA:   3'- -CCCU-CUGCgGU-----UCCGGag-CCCGGa--CC- -5'
28518 5' -61.3 NC_005946.1 + 46223 0.66 0.599621
Target:  5'- cGGGucGGACGagAAGcCCUcuaucuugaCGGGCCUGGg -3'
miRNA:   3'- -CCC--UCUGCggUUCcGGA---------GCCCGGACC- -5'
28518 5' -61.3 NC_005946.1 + 7951 0.66 0.599621
Target:  5'- aGGGAGACGacu-GGCa--GGGCCaGGc -3'
miRNA:   3'- -CCCUCUGCgguuCCGgagCCCGGaCC- -5'
28518 5' -61.3 NC_005946.1 + 71545 0.66 0.58964
Target:  5'- gGGGAGACGCCugcccuuGCCguagaccugCGGGUaaGGc -3'
miRNA:   3'- -CCCUCUGCGGuuc----CGGa--------GCCCGgaCC- -5'
28518 5' -61.3 NC_005946.1 + 85067 0.66 0.58964
Target:  5'- cGGcAGACGCCGuGGCaaaGaGCCUGGa -3'
miRNA:   3'- cCC-UCUGCGGUuCCGgagCcCGGACC- -5'
28518 5' -61.3 NC_005946.1 + 29576 0.66 0.58964
Target:  5'- cGGAGACGUgggagguaUggGGCCagaGGGCCcaaagGGa -3'
miRNA:   3'- cCCUCUGCG--------GuuCCGGag-CCCGGa----CC- -5'
28518 5' -61.3 NC_005946.1 + 46403 0.67 0.559901
Target:  5'- gGGGuccAGGC-CCGAGGCCUUGGcGUCUc- -3'
miRNA:   3'- -CCC---UCUGcGGUUCCGGAGCC-CGGAcc -5'
28518 5' -61.3 NC_005946.1 + 91722 0.67 0.559901
Target:  5'- -uGAG-CGCgGAGGCCaUCaGGGCCaGGu -3'
miRNA:   3'- ccCUCuGCGgUUCCGG-AG-CCCGGaCC- -5'
28518 5' -61.3 NC_005946.1 + 93526 0.67 0.540305
Target:  5'- gGGGAGcaaACGCCAAGGUgUaCGacGGCCguaGGu -3'
miRNA:   3'- -CCCUC---UGCGGUUCCGgA-GC--CCGGa--CC- -5'
28518 5' -61.3 NC_005946.1 + 10529 0.67 0.530593
Target:  5'- aGGGGGAcCGUCAGGcCCagGGGCUUcGGg -3'
miRNA:   3'- -CCCUCU-GCGGUUCcGGagCCCGGA-CC- -5'
28518 5' -61.3 NC_005946.1 + 29344 0.68 0.511367
Target:  5'- uGGGAG-CGgCuGGGCCUCagGGGCagagGGg -3'
miRNA:   3'- -CCCUCuGCgGuUCCGGAG--CCCGga--CC- -5'
28518 5' -61.3 NC_005946.1 + 18912 0.68 0.501862
Target:  5'- cGGGuucGGCGCCc-GGCCUgGGGUCa-- -3'
miRNA:   3'- -CCCu--CUGCGGuuCCGGAgCCCGGacc -5'
28518 5' -61.3 NC_005946.1 + 59005 0.68 0.483092
Target:  5'- cGGGucgguGACGUCcuugAAGGUCcUGGGCCUGa -3'
miRNA:   3'- -CCCu----CUGCGG----UUCCGGaGCCCGGACc -5'
28518 5' -61.3 NC_005946.1 + 82176 0.68 0.483092
Target:  5'- cGGGAGGacccUGuCCAGgcuaaagucugcGGCCUCcauGGCCUGGa -3'
miRNA:   3'- -CCCUCU----GC-GGUU------------CCGGAGc--CCGGACC- -5'
28518 5' -61.3 NC_005946.1 + 49734 0.68 0.464667
Target:  5'- cGGAGACagagacuccuGUCAcugGGGCCUCGGGgaUGGc -3'
miRNA:   3'- cCCUCUG----------CGGU---UCCGGAGCCCggACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.