miRNA: 3'- -CUCUGC-CUCUCCGUAGgAGGC-GGGaa -5'
miRNA: 3'- -CUCUGCCUC--------UCCGUAgGAGG-CGGGaa -5'
miRNA: 3'- -CUCUGCCUCuCCGUAGG-------AGGcGGGAA- -5'
miRNA: 3'- -CUCUGCC----------UCUCCGua-----GGAGGCGGGAA- -5'
miRNA: 3'- cUCugCCUCUCCGuAGGAGG-CGGGaa -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 28521 | 3' | -60 | NC_005946.1 | + | 41940 | 0.66 | 0.585703 |
|
Target: 5'- aGGGACGcGGGGGGUAUC-UCUGaCCCg- -3' miRNA: 3'- -CUCUGC-CUCUCCGUAGgAGGC-GGGaa -5' |
|||||||
| 28521 | 3' | -60 | NC_005946.1 | + | 10744 | 0.7 | 0.403319 |
|
Target: 5'- gGGGGCGGAGguccucgcGGGCAU-CUCCaGCCCg- -3' miRNA: 3'- -CUCUGCCUC--------UCCGUAgGAGG-CGGGaa -5' |
|||||||
| 28521 | 3' | -60 | NC_005946.1 | + | 17047 | 0.7 | 0.377029 |
|
Target: 5'- gGGGACGGAGuGGCGUCCuacuuuuUCCcCUCUUa -3' miRNA: 3'- -CUCUGCCUCuCCGUAGG-------AGGcGGGAA- -5' |
|||||||
| 28521 | 3' | -60 | NC_005946.1 | + | 3880 | 0.72 | 0.294108 |
|
Target: 5'- gGAGACGGcugccagcucGGGGGCcugcucgCCUCCGUCCUUc -3' miRNA: 3'- -CUCUGCC----------UCUCCGua-----GGAGGCGGGAA- -5' |
|||||||
| 28521 | 3' | -60 | NC_005946.1 | + | 96066 | 0.77 | 0.125277 |
|
Target: 5'- uAGugGGGGAGGC-UCCUCCuGCCCc- -3' miRNA: 3'- cUCugCCUCUCCGuAGGAGG-CGGGaa -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home