miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28521 5' -53.4 NC_005946.1 + 32446 0.66 0.925887
Target:  5'- cGAAgcaGGCCAaauacgcagAUCggGCCUCUGUGGa -3'
miRNA:   3'- uCUUg--CCGGUg--------UAGa-UGGAGACACCg -5'
28521 5' -53.4 NC_005946.1 + 83388 0.67 0.907888
Target:  5'- uAGu-CGGCgCAC-UCUGCCUCgagGGCc -3'
miRNA:   3'- -UCuuGCCG-GUGuAGAUGGAGacaCCG- -5'
28521 5' -53.4 NC_005946.1 + 2573 0.67 0.901371
Target:  5'- cAGAcgGCGGCCGcCGUCUguaaauAUCUUUGUGuGUg -3'
miRNA:   3'- -UCU--UGCCGGU-GUAGA------UGGAGACAC-CG- -5'
28521 5' -53.4 NC_005946.1 + 16626 0.67 0.894599
Target:  5'- -cGGCGGaCCuaGUUUGCCUCUGcagGGCg -3'
miRNA:   3'- ucUUGCC-GGugUAGAUGGAGACa--CCG- -5'
28521 5' -53.4 NC_005946.1 + 13400 0.67 0.873561
Target:  5'- --cAUGGCCACAUUgcagaaauccagcacACaCUCUGUGGUc -3'
miRNA:   3'- ucuUGCCGGUGUAGa--------------UG-GAGACACCG- -5'
28521 5' -53.4 NC_005946.1 + 49609 0.69 0.823036
Target:  5'- aAGGugGGagACGUCgGCCUCUGccgccggguccaUGGCa -3'
miRNA:   3'- -UCUugCCggUGUAGaUGGAGAC------------ACCG- -5'
28521 5' -53.4 NC_005946.1 + 90983 0.69 0.804842
Target:  5'- aGGAuCGGUCACGUagGCCgUCUuGUGGCc -3'
miRNA:   3'- -UCUuGCCGGUGUAgaUGG-AGA-CACCG- -5'
28521 5' -53.4 NC_005946.1 + 85028 0.7 0.766483
Target:  5'- uGGAGCaGGCCGCcgCggugGCC-CUGagGGCa -3'
miRNA:   3'- -UCUUG-CCGGUGuaGa---UGGaGACa-CCG- -5'
28521 5' -53.4 NC_005946.1 + 19410 0.7 0.736307
Target:  5'- cAGGACGGCUGcCGUgUGCCUCaucuUGGCc -3'
miRNA:   3'- -UCUUGCCGGU-GUAgAUGGAGac--ACCG- -5'
28521 5' -53.4 NC_005946.1 + 86054 0.72 0.620161
Target:  5'- gAGGACGGCCGuaggcaggaccUAUCacACC-CUGUGGCc -3'
miRNA:   3'- -UCUUGCCGGU-----------GUAGa-UGGaGACACCG- -5'
28521 5' -53.4 NC_005946.1 + 65625 0.73 0.609473
Target:  5'- cGGACGGCCugAcg-GCCUCUccGGCa -3'
miRNA:   3'- uCUUGCCGGugUagaUGGAGAcaCCG- -5'
28521 5' -53.4 NC_005946.1 + 58823 0.73 0.598805
Target:  5'- --cACGGCCGCcgcaaaccccAUCaUGCCcCUGUGGCg -3'
miRNA:   3'- ucuUGCCGGUG----------UAG-AUGGaGACACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.