miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28523 5' -58.4 NC_005946.1 + 64150 0.66 0.717435
Target:  5'- aGAGGUCcaggauggUGGGGuauccgucGGGACcccuGGGGCCCCg -3'
miRNA:   3'- aCUCCAG--------ACUCU--------CUCUG----CCUCGGGGa -5'
28523 5' -58.4 NC_005946.1 + 33239 0.66 0.717435
Target:  5'- gUGGGGUUcgUGAGGGAGGCcaGGCUCUg -3'
miRNA:   3'- -ACUCCAG--ACUCUCUCUGccUCGGGGa -5'
28523 5' -58.4 NC_005946.1 + 61855 0.66 0.701263
Target:  5'- aUGAGGUCgggGuGAGAGAUGGcauguaggcggcguaGGauCCCCUc -3'
miRNA:   3'- -ACUCCAGa--CuCUCUCUGCC---------------UC--GGGGA- -5'
28523 5' -58.4 NC_005946.1 + 69653 0.66 0.686986
Target:  5'- -cGGGUCUGGGGGgagcggccuugaGGACGGAagagacacaaGCCCUc -3'
miRNA:   3'- acUCCAGACUCUC------------UCUGCCU----------CGGGGa -5'
28523 5' -58.4 NC_005946.1 + 18765 0.67 0.676731
Target:  5'- --uGGUCUGAgGAGGGACGGcguugAGCUCg- -3'
miRNA:   3'- acuCCAGACU-CUCUCUGCC-----UCGGGga -5'
28523 5' -58.4 NC_005946.1 + 73274 0.67 0.62507
Target:  5'- uUGAGGagUUUGGGguAGAGGgcUGGAGCCCUg -3'
miRNA:   3'- -ACUCC--AGACUC--UCUCU--GCCUCGGGGa -5'
28523 5' -58.4 NC_005946.1 + 2834 0.67 0.62507
Target:  5'- aGGGGUCccaaGGGuGGAGugGGAGCCa-- -3'
miRNA:   3'- aCUCCAGa---CUC-UCUCugCCUCGGgga -5'
28523 5' -58.4 NC_005946.1 + 91005 0.68 0.573536
Target:  5'- uUGuGGcccgCUauGGGAGACGGAGCCCUc -3'
miRNA:   3'- -ACuCCa---GAcuCUCUCUGCCUCGGGGa -5'
28523 5' -58.4 NC_005946.1 + 17027 0.69 0.532025
Target:  5'- aUGAGGcUCUGGagauuguGGGGGACGGAGUggcgUCCUa -3'
miRNA:   3'- -ACUCC-AGACU-------CUCUCUGCCUCG----GGGA- -5'
28523 5' -58.4 NC_005946.1 + 93830 0.7 0.503325
Target:  5'- cUGAGGgagaUGAGGGAGcugGCGGAGCaggaucCCCUc -3'
miRNA:   3'- -ACUCCag--ACUCUCUC---UGCCUCG------GGGA- -5'
28523 5' -58.4 NC_005946.1 + 3016 0.7 0.503325
Target:  5'- aGGGGUCcaGAGGGAcccagaggaccgGAgGGAGCUCCUg -3'
miRNA:   3'- aCUCCAGa-CUCUCU------------CUgCCUCGGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.