miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28524 5' -56.7 NC_005946.1 + 64471 0.66 0.824
Target:  5'- -cGGGUccGugAGGUCCGCggggUCCCGg -3'
miRNA:   3'- cuCCCAu-UugUCCAGGCGaag-GGGGC- -5'
28524 5' -56.7 NC_005946.1 + 96061 0.66 0.806315
Target:  5'- uGGGGUAGugGGGgagGCUccuccugCCCCCGu -3'
miRNA:   3'- cUCCCAUUugUCCaggCGAa------GGGGGC- -5'
28524 5' -56.7 NC_005946.1 + 61440 0.66 0.804509
Target:  5'- cAGGcacucuacCAGGUCCGUUUCCCuCCa -3'
miRNA:   3'- cUCCcauuu---GUCCAGGCGAAGGG-GGc -5'
28524 5' -56.7 NC_005946.1 + 58366 0.67 0.778582
Target:  5'- cGGGGUAGGucacgucccCGGGcaccaCCGCagCCCCCGa -3'
miRNA:   3'- cUCCCAUUU---------GUCCa----GGCGaaGGGGGC- -5'
28524 5' -56.7 NC_005946.1 + 104763 0.67 0.778582
Target:  5'- gGGGGGUAAACuuccacccgAGGUCCGUUaaaUCUUgCGa -3'
miRNA:   3'- -CUCCCAUUUG---------UCCAGGCGA---AGGGgGC- -5'
28524 5' -56.7 NC_005946.1 + 81046 0.67 0.749624
Target:  5'- uGGGGaugaUAGGCAGGUCUcCUcugaugggaUCCCCCa -3'
miRNA:   3'- cUCCC----AUUUGUCCAGGcGA---------AGGGGGc -5'
28524 5' -56.7 NC_005946.1 + 94891 0.68 0.709559
Target:  5'- aGGGGGUGGcACAGGaaCGCUcccagguuggUCCCCUu -3'
miRNA:   3'- -CUCCCAUU-UGUCCagGCGA----------AGGGGGc -5'
28524 5' -56.7 NC_005946.1 + 33630 0.68 0.699347
Target:  5'- uGGGG-AAGCAGG-CCauagGCUUCCCCg- -3'
miRNA:   3'- cUCCCaUUUGUCCaGG----CGAAGGGGgc -5'
28524 5' -56.7 NC_005946.1 + 45774 0.69 0.658011
Target:  5'- -cGuGGUGGugGGGUCCaCcgUCCCCCa -3'
miRNA:   3'- cuC-CCAUUugUCCAGGcGa-AGGGGGc -5'
28524 5' -56.7 NC_005946.1 + 33361 0.71 0.534014
Target:  5'- aGAGGGgaucAGgGGGUCCGgauacgacagUCCCCCGg -3'
miRNA:   3'- -CUCCCau--UUgUCCAGGCga--------AGGGGGC- -5'
28524 5' -56.7 NC_005946.1 + 10555 0.72 0.48454
Target:  5'- cGGGGG-AGGCAGGUUCcccccgagGCgauuUCCCCCGg -3'
miRNA:   3'- -CUCCCaUUUGUCCAGG--------CGa---AGGGGGC- -5'
28524 5' -56.7 NC_005946.1 + 101395 0.72 0.455927
Target:  5'- uGAGGGggagAAACAGGUuaaaggCCGCggCCCUCa -3'
miRNA:   3'- -CUCCCa---UUUGUCCA------GGCGaaGGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.