miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28525 5' -52.3 NC_005946.1 + 74030 0.66 0.967979
Target:  5'- cGGACCccAAGGGGCUGgagacuGUUuacCCCAGg -3'
miRNA:   3'- -CCUGGc-UUCUCUGACau----CAGu--GGGUC- -5'
28525 5' -52.3 NC_005946.1 + 23194 0.66 0.961126
Target:  5'- cGGuucGCCucuGGAGACUGagGGUguCCCAGg -3'
miRNA:   3'- -CC---UGGcu-UCUCUGACa-UCAguGGGUC- -5'
28525 5' -52.3 NC_005946.1 + 94038 0.66 0.957345
Target:  5'- aGGACCagcaggggGAGGAGGCUGgugaUugCCAGg -3'
miRNA:   3'- -CCUGG--------CUUCUCUGACaucaGugGGUC- -5'
28525 5' -52.3 NC_005946.1 + 75123 0.67 0.948606
Target:  5'- cGGACCuGGGAGccacccuGCcGUAGagGCCCGGg -3'
miRNA:   3'- -CCUGGcUUCUC-------UGaCAUCagUGGGUC- -5'
28525 5' -52.3 NC_005946.1 + 102913 0.67 0.934185
Target:  5'- gGGGCCGGcagguuucaggGGAGACaGgGGUCcagagggACCCAGa -3'
miRNA:   3'- -CCUGGCU-----------UCUCUGaCaUCAG-------UGGGUC- -5'
28525 5' -52.3 NC_005946.1 + 103032 0.68 0.899037
Target:  5'- gGGACCaaaGGGAGACgcgGGUCucCCCGGa -3'
miRNA:   3'- -CCUGGc--UUCUCUGacaUCAGu-GGGUC- -5'
28525 5' -52.3 NC_005946.1 + 89752 0.69 0.854387
Target:  5'- aGGACCuGggGAGugUcGggcAGcCACCCGGc -3'
miRNA:   3'- -CCUGG-CuuCUCugA-Ca--UCaGUGGGUC- -5'
28525 5' -52.3 NC_005946.1 + 23798 0.71 0.801919
Target:  5'- uGGuCUGGAGGGACUGcAG--GCCCAGg -3'
miRNA:   3'- -CCuGGCUUCUCUGACaUCagUGGGUC- -5'
28525 5' -52.3 NC_005946.1 + 20585 0.72 0.712676
Target:  5'- uGACCGAGcAGACUGUGGUCGugUCgCAGa -3'
miRNA:   3'- cCUGGCUUcUCUGACAUCAGU--GG-GUC- -5'
28525 5' -52.3 NC_005946.1 + 72847 0.73 0.659999
Target:  5'- uGGCCGAGGGGGCgggGUucucccuggAGaCACCCAGg -3'
miRNA:   3'- cCUGGCUUCUCUGa--CA---------UCaGUGGGUC- -5'
28525 5' -52.3 NC_005946.1 + 51721 0.77 0.472754
Target:  5'- uGACUGucAAGGGACUGUcagGGUCACCCGa -3'
miRNA:   3'- cCUGGC--UUCUCUGACA---UCAGUGGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.